shox2 (shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335)


Basic Information

Item Value
gene id shox2
gene name shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 5894504 ~ 5901566 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU373443
tttaaaaaaaaaaaaacaagaaatagttaaaaaaaaagaggctggccTCGTTTTATCTGAAACAGAGTTTCTCATGAAAAGGACGCTTATGGATGTCTGTGCGCGAGGacttataacaaaaaaaacaacaacaacaacaaaaacacattaaatcttTCTTCTAACGTGCCATCACGTGAGCTCGGTGTCGCAGGGTGGCGTGACGTCACGCCACGCCCTCACGTCAAATCAGATGGTGAACTTGGACACCTTGAGCGCGCgcctgaatgattttttttgggggggttcTCGAGCCAGTGGACGTTTGggaaaacctaaaaaaaaaaaaaaagaaaaagaaagaaagaaaaactatcacacattttaaacacattttacttattattattattattattattattattattattattattattgagtgtATGGTGAATTTCCTCACATATCAGGTCTTTATCCAATACAGAGTGTCCACTTCCTGCAGCTTACACTGAGGTCCCAGTATTAATGTACAGAATCAGATACATCTTTATCCTACTGAGAGCATTAAAGTCACCGCTGCGGTACTCAACGTGTACAATATGTCCAAATGGACagatattttggttattttgtGCTTCATGAAGACATTGTGGGAACCCTTTTTgggctgttgttttttttttattctgattatttttatttttttgcattcacaCCGTGTTTAAAGTCATGTGGATCTCTAtgtaatgttggtgtttttttataAAGTGAACGTACCTCGACTGCAGGCTCGGATCTCCTGGAATATCCCTGAAATaccttttaacattttctttttaaaaacaaacaaacaaacaaaccaacaaacaaacaaaaaaacaaattataattTCATCATTACTGTGAAACGTGAACTCACCTGACCACAGTGTTTTCAATTCATAATAAATCC
>TU373444
CAGGTCTGTAACTCCCCGCGCCGAGACCCGGAACCGGCCCGCATCTACGAGCTGCCGAGCAGAGCGCGAGCTCCGAGAGTTGGCAACCCGCATCAGCacgagagaagaaaaaaaaaaaaaaaaaaaaaaaacagagagtgagagaataagCAGCATTGATGTCTTATCTGAGACTGCTGAGAAACTGAGCttgagaaagtgagtgagaagagaagagaagagtagagaaaagagaagagaagactgGCGggctttatttttccttcttcttcttgggACCAGTGATGGAAGAACTCACCGCTTTCGTGTCCAAATCCTTTGAtcagaaagtgaaagagaagaaagaggcgATCACGTACCGGGAGGTGCTGGAGACGGGCTCGGCGCGAGCCAGGGAAGCGCTCCCGGTTGAAGCAGGGCGCGAGGACGCGAGCATTCTAGCGCGAGGAGCCGTCGCGCGCTCACCGGTCAGAGAAGCGGACATGACGGGGCCGGAGAGGACGAGGGACACGGGGAGTCCCAAACTCACAGACGGCATCCTGGACGTGAAGGAGCGAAAAGAGGATGCCAAGCCGACAGAGGATGAGACTCAGACCAAAATCAAGCAGAGGAGAAGTCGGACTAACTTTACTCTGGAGCAGCTGAATGAGCTGGAGAGGCTGTTCGACGAGACGCACTATCCGGACGCGTTCATGCGCGAGGAGCTGAGTCAGCGGCTCGGGCTCTCCGAAGCGCGCGTGCAGGTACGACTTGTCACCGTCTGCGTGCTGGATGTTTCAGCGCGCATCCTGAAGGCACGACTTGCTTTGCATTGTGTACCTGTGTCCATTTTCGGGCCAAg
>XM_026941320.2
TCTGTAACTCCCCGCGCCGAGACCCGGAACCGGCCCGCATCTACGAGCTGCCGAGCAGAGCGCGAGCTCCGAGAGTTGGCAACCCGCATCAGCacgagagaagaaaaaaaaaaaaaaaaaaaaaaaacagagagtgagagaataagCAGCATTGATGTCTTATCTGAGACTGCTGAGAAACTGAGCttgagaaagtgagtgagaagagaagagaagagtagagaaaagagaagagaagactgGCGggctttatttttccttcttcttcttgggACCAGTGATGGAAGAACTCACCGCTTTCGTGTCCAAATCCTTTGAtcagaaagtgaaagagaagaaagaggcgATCACGTACCGGGAGGTGCTGGAGACGGGCTCGGCGCGAGCCAGGGAAGCGCTCCCGGTTGAAGCAGGGCGCGAGGACGCGAGCATTCTAGCGCGAGGAGCCGTCGCGCGCTCACCGGTCAGAGAAGCGGACATGACGGGGCCGGAGAGGACGAGGGACACGGGGAGTCCCAAACTCACAGACGGCATCCTGGACGTGAAGGAGCGAAAAGAGGATGCCAAGCCGACAGAGGATGAGACTCAGACCAAAATCAAGCAGAGGAGAAGTCGGACTAACTTTACTCTGGAGCAGCTGAATGAGCTGGAGAGGCTGTTCGACGAGACGCACTATCCGGACGCGTTCATGCGCGAGGAGCTGAGTCAGCGGCTCGGGCTCTCCGAAGCGCGCGTGCAGGTTTGGTTTCAAAACAGGAGAGCcaaatgcagaaaacaggaaaaccaGTTACACAAAGGGGTGCTCATCGGAGCTGCGAGTCAGTTTGAAGCGTGCCGCGTCGCGCCATATGTCAACGTGGGAGCTTTGCGCATGCCATTCCAACAGGATAGTCATTGCAACGTGCCACCCTTCTCCTTTCAGGTGCAGGCGCAGCTGCAGCTGGACAGCGCCGTGGCCCACGCGCACCATCACCTGCACTCTCACCTGGCGGCGCACGCGCCCTACATGATGTTCCCCGCGCCGCCGTTCGGCTTGCCCTTGGCCACGCTGGCGGCGGAGTCTGCCTCGGCGGCGTCGGTGGTGGCCGCAGCCGCCGCCGCCAAAAACAGCAACAAGAACTCGAGCATCGCGGATCTGAGACTGAAGGCCAAGAAGCACGCGGCGGCGCTCGGACTGTGACACGCCGGTGCGCGCGCGCGCGGGCGGGCACAGTGCACACTCACAACACTAGGACGTTATTTATACTCTCTTATGAAGGACACTCCAGAATAAAGGCTTATTTATGACATGAACAACACAAACTGTGAAATCGAAGTGAAGCCTGTCACGGATGCAGGTTGCAACCAGGACGAACCGGAAGCGGAAACCATTTGTCCAAGACAAAACTCATTCCGAATGTGTGCAAACGCAGCTGGGACGTTGGACTCCTGTGTGACAAAGTGAACACTTTCTGCGTagtttgctgttttaaaaaaaaaaaaacaagaaatagttaaaaaaaaagaggctggccTCGTTTTATCTGAAACAGAGTTTCTCATGAAAAGGACGCTTATGGATGTCTGTGCGCGAGGacttataacaaaaaaaacaacaacaacaacaaaaacacattaaatcttTCTTCTAACGTGCCATCACGTGAGCTCGGTGTCGCAGGGTGGCGTGACGTCACGCCACGCCCTCACGTCAAATCAGATGGTGAACTTGGACACCTTGAGCGCGCgcctgaatgattttttttgggggggttcTCGAGCCAGTGGACGTTTGggaaaacctaaaaaaaaaaaaaaagaaaaagaaagaaagaaaaactatcacacattttaaacacattttacttattattattattattattattattattattattattattattgagtgtATGGTGAATTTCCTCACATATCAGGTCTTTATCCAATACAGAGTGTCCACTTCCTGCAGCTTACACTGAGGTCCCAGTATTAATGTACAGAATCAGATACATCTTTATCCTACTGAGAGCATTAAAGTCACCGCTGCGGTACTCAACGTGTACAATATGTCCAAATGGACagatattttggttattttgtGCTTCATGAAGACATTGTGGGAACCCTTTTTgggctgttgttttttttttattctgattatttttatttttttgcattcacaCCGTGTTTAAAGTCATGTGGATCTCTAtgtaatgttggtgtttttttataAAGTGAACGTACCTCGACTGCAGGCTCGGATCTCCTGGAATATCCCTGAAATaccttttaacattttctttttaaaaacaaacaaacaaacaaaccaacaaacaaacaaaaaaacaaattataattTCATCATTACTGTGAAACGTGAACTCACCTGACCACAGTGTTTTCAATTCATAATAAATC
>XM_026941322.2
TCTGTAACTCCCCGCGCCGAGACCCGGAACCGGCCCGCATCTACGAGCTGCCGAGCAGAGCGCGAGCTCCGAGAGTTGGCAACCCGCATCAGCacgagagaagaaaaaaaaaaaaaaaaaaaaaaaacagagagtgagagaataagCAGCATTGATGTCTTATCTGAGACTGCTGAGAAACTGAGCttgagaaagtgagtgagaagagaagagaagagtagagaaaagagaagagaagactgGCGggctttatttttccttcttcttcttgggACCAGTGATGGAAGAACTCACCGCTTTCGTGTCCAAATCCTTTGAtcagaaagtgaaagagaagaaagaggcgATCACGTACCGGGAGGTGCTGGAGACGGGCTCGGCGCGAGCCAGGGAAGCGCTCCCGGTTGAAGCAGGGCGCGAGGACGCGAGCATTCTAGCGCGAGGAGCCGTCGCGCGCTCACCGGTCAGAGAAGCGGACATGACGGGGCCGGAGAGGACGAGGGACACGGGGAGTCCCAAACTCACAGACGGCATCCTGGACGTGAAGGAGCGAAAAGAGGATGCCAAGCCGACAGAGGATGAGACTCAGACCAAAATCAAGCAGAGGAGAAGTCGGACTAACTTTACTCTGGAGCAGCTGAATGAGCTGGAGAGGCTGTTCGACGAGACGCACTATCCGGACGCGTTCATGCGCGAGGAGCTGAGTCAGCGGCTCGGGCTCTCCGAAGCGCGCGTGCAGGTTTGGTTTCAAAACAGGAGAGCcaaatgcagaaaacaggaaaaccaGTTACACAAAGGGGTGCTCATCGGAGCTGCGAGTCAGTTTGAAGCGTGCCGCGTCGCGCCATATGTCAACGTGGGAGCTTTGCGCATGCCATTCCAACAGGTGCAGGCGCAGCTGCAGCTGGACAGCGCCGTGGCCCACGCGCACCATCACCTGCACTCTCACCTGGCGGCGCACGCGCCCTACATGATGTTCCCCGCGCCGCCGTTCGGCTTGCCCTTGGCCACGCTGGCGGCGGAGTCTGCCTCGGCGGCGTCGGTGGTGGCCGCAGCCGCCGCCGCCAAAAACAGCAACAAGAACTCGAGCATCGCGGATCTGAGACTGAAGGCCAAGAAGCACGCGGCGGCGCTCGGACTGTGACACGCCGGTGCGCGCGCGCGCGGGCGGGCACAGTGCACACTCACAACACTAGGACGTTATTTATACTCTCTTATGAAGGACACTCCAGAATAAAGGCTTATTTATGACATGAACAACACAAACTGTGAAATCGAAGTGAAGCCTGTCACGGATGCAGGTTGCAACCAGGACGAACCGGAAGCGGAAACCATTTGTCCAAGACAAAACTCATTCCGAATGTGTGCAAACGCAGCTGGGACGTTGGACTCCTGTGTGACAAAGTGAACACTTTCTGCGTagtttgctgttttaaaaaaaaaaaaacaagaaatagttaaaaaaaaagaggctggccTCGTTTTATCTGAAACAGAGTTTCTCATGAAAAGGACGCTTATGGATGTCTGTGCGCGAGGacttataacaaaaaaaacaacaacaacaacaaaaacacattaaatcttTCTTCTAACGTGCCATCACGTGAGCTCGGTGTCGCAGGGTGGCGTGACGTCACGCCACGCCCTCACGTCAAATCAGATGGTGAACTTGGACACCTTGAGCGCGCgcctgaatgattttttttgggggggttcTCGAGCCAGTGGACGTTTGggaaaacctaaaaaaaaaaaaaaagaaaaagaaagaaagaaaaactatcacacattttaaacacattttacttattattattattattattattattattattattattattattgagtgtATGGTGAATTTCCTCACATATCAGGTCTTTATCCAATACAGAGTGTCCACTTCCTGCAGCTTACACTGAGGTCCCAGTATTAATGTACAGAATCAGATACATCTTTATCCTACTGAGAGCATTAAAGTCACCGCTGCGGTACTCAACGTGTACAATATGTCCAAATGGACagatattttggttattttgtGCTTCATGAAGACATTGTGGGAACCCTTTTTgggctgttgttttttttttattctgattatttttatttttttgcattcacaCCGTGTTTAAAGTCATGTGGATCTCTAtgtaatgttggtgtttttttataAAGTGAACGTACCTCGACTGCAGGCTCGGATCTCCTGGAATATCCCTGAAATaccttttaacattttctttttaaaaacaaacaaacaaacaaaccaacaaacaaacaaaaaaacaaattataattTCATCATTACTGTGAAACGTGAACTCACCTGACCACAGTGTTTTCAATTCATAATAAATC

Function

symbol description
shox2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Acts upstream of or within heart development and regulation of heart contraction. Predicted to be active in nucleus. Is expressed in apical ectodermal ridge pectoral fin bud; heart; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in lung cancer. Orthologous to human SHOX2 (short stature homeobox 2).

NR:

description
PREDICTED: short stature homeobox protein 2 isoform X1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09331 SHOX; short stature homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU373443 False 937 lncRNA 0.35 1 5900630 5901566
TU373444 False 841 TUCP 0.55 2 5894504 5896830
XM_026941320.2 True 2403 mRNA 0.48 5 5894508 5901565
XM_026941322.2 False 2367 mRNA 0.48 5 5894508 5901565

Neighbor

gene id symbol gene type direction distance location
LOC113543227 crgm2,LOC108280851,LOC108260581,LOC108260578,LOC108260584,LOC108280748,LOC108260582,LOC108260664,LOC108260580,LOC108280755 coding upstream 111270 5782293 ~ 5783234 (+)
lxn LOC108280775 coding upstream 170705 5716306 ~ 5723799 (+)
ift80 ift80 coding upstream 571898 5249468 ~ 5322606 (+)
trim59 trim59 coding upstream 667797 5222533 ~ 5226707 (+)
LOC113543161 arl14 coding upstream 696570 5196649 ~ 5197934 (+)
dock10 dock10 coding downstream 93923 5995489 ~ 6096462 (+)
LOC113543361 NA coding downstream 204436 6106002 ~ 6108369 (+)
cul3b cul3,LOC100710156,LOC104924156 coding downstream 223045 6124611 ~ 6138401 (+)
LOC113543022 fam124b coding downstream 239019 6140585 ~ 6147090 (+)
sbds sbds,LOC107749050,LOC107728231,LOC106581067 coding downstream 315872 6217438 ~ 6224414 (+)
LOC117599998 NA non-coding upstream 152150 5741742 ~ 5742354 (+)
G314969 NA non-coding upstream 282741 5611559 ~ 5611763 (+)
G314954 NA non-coding upstream 306585 5587702 ~ 5587919 (+)
G314923 NA non-coding upstream 346312 5547889 ~ 5548192 (+)
G314915 NA non-coding upstream 360519 5533766 ~ 5533985 (+)
G315454 NA non-coding downstream 275888 6177454 ~ 6178053 (+)
G315579 LOC108280872 non-coding downstream 323193 6224759 ~ 6225767 (+)
G315580 NA non-coding downstream 324405 6225971 ~ 6226670 (+)
G315584 LOC108280690 non-coding downstream 329010 6230576 ~ 6231579 (+)
G315583 LOC108280691,LOC108424091 non-coding downstream 331035 6232601 ~ 6234263 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 523607 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 674886 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 677913 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 803231 5087839 ~ 5091273 (+)
LOC113543089 mbp other upstream 936383 4901470 ~ 4958121 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other downstream 325151 6226717 ~ 6227240 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 1035774 6937340 ~ 6944990 (+)
G316001 NA other downstream 1231893 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 1680747 7582313 ~ 7598164 (+)
G316413 NA other downstream 1793968 7695534 ~ 7695919 (+)

Expression


Co-expression Network