G315581 (cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975)


Basic Information

Item Value
gene id G315581
gene name cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6226717 ~ 6227240 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU373737
ACAAACAAGAATCCCGCTGTCACCCAGCCCACATATATGGCAGcacccatctctctcttcaGCGCCTCATGCACTACAGGGTTATGGAAGTCCCTGATGATGGTGTCAGCCGTCCAGGAAACGGGAATTGCGGCACCAAGTCCCGAGAGCATGAAAGTGACCCCCGACGCCACCACGATCCTAGCCTTGGCCCATGGATTGCTGAGACAGTTGGTGCACTCGGCTCCTAGCAGGAAGATGAGGAACCCGAGACATGCAAGTGCCATAGTGGTGACCACGAGGCCACGCGAGGCCTGCAGTGTTGGGTCCAGGTCTAGCAGAGCATCGTACAGCTTGCACTGCATCTGGCCCGTGCGCTCGTACACACAGGTCATCCACAGGCCCTCCCAGAAGACCTGCGCCACCACGATGTTAGTGCCCACAAACGCTGTCACCTTCCACATGGGCAGGGCGCAGATGATGATGGTGCCTGCCAGGCCAATCATAGACAGCGTGATGCCCAGCACCTGCAGAGCCATATGGAG

Function

symbol description
cldnj Predicted to enable structural molecule activity. Acts upstream of or within lifelong otolith mineralization. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in central nervous system; otic epithelium; otic vesicle; and ovary.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU373737 True 524 TUCP 0.58 1 6226717 6227240

Neighbor

gene id symbol gene type direction distance location
sbds sbds,LOC107749050,LOC107728231,LOC106581067 coding upstream 2303 6217438 ~ 6224414 (+)
LOC113543022 fam124b coding upstream 79627 6140585 ~ 6147090 (+)
cul3b cul3,LOC100710156,LOC104924156 coding upstream 88316 6124611 ~ 6138401 (+)
LOC113543361 NA coding upstream 118348 6106002 ~ 6108369 (+)
dock10 dock10 coding upstream 130255 5995489 ~ 6096462 (+)
LOC113542971 LOC108280887,LOC103033590,LOC108424028 coding downstream 36388 6263628 ~ 6266410 (+)
LOC113543241 cld3,LOC108424093,LOC103033895 coding downstream 39253 6266493 ~ 6267874 (+)
LOC113543329 LOC108280888,LOC108424094,LOC105905016,LOC107680076,LOC107598663,LOC100333863 coding downstream 47499 6274739 ~ 6276110 (+)
LOC113543080 cdkl1,LOC108424097,LOC107551271,LOC107680089,LOC105890602,LOC107598661 coding downstream 156770 6384010 ~ 6399285 (+)
LOC113543083 axl,LOC107572376,LOC107663740 coding downstream 207026 6434266 ~ 6470111 (+)
G315580 NA non-coding upstream 47 6225971 ~ 6226670 (+)
G315579 LOC108280872 non-coding upstream 950 6224759 ~ 6225767 (+)
G315454 NA non-coding upstream 48664 6177454 ~ 6178053 (+)
LOC117599998 NA non-coding upstream 484363 5741742 ~ 5742354 (+)
G314969 NA non-coding upstream 614954 5611559 ~ 5611763 (+)
G315584 LOC108280690 non-coding downstream 3336 6230576 ~ 6231579 (+)
G315583 LOC108280691,LOC108424091 non-coding downstream 5361 6232601 ~ 6234263 (+)
G315591 LOC108280904,LOC108424092,LOC107680073,LOC107551266,LOC107749066,LOC107703962,LOC107598569 non-coding downstream 24194 6251434 ~ 6252669 (+)
G315647 NA non-coding downstream 172500 6399740 ~ 6399979 (+)
G315648 NA non-coding downstream 176162 6403402 ~ 6403601 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 325151 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 855820 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 1007099 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 1010126 5201021 ~ 5216591 (+)
sptssb sptssb,LOC107567691,LOC107703014,LOC107750122 other upstream 1135444 5087839 ~ 5091273 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 710100 6937340 ~ 6944990 (+)
G316001 NA other downstream 906219 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 1355073 7582313 ~ 7598164 (+)
G316413 NA other downstream 1468294 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 1524454 7751694 ~ 7756961 (+)

Expression


Co-expression Network