G315901


Basic Information

Item Value
gene id G315901
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 6934949 ~ 6935177 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU374158
GTGGACGCGCATATATGAGCCGTTTGTTTTTTAGGCAATACTGTGACTCTAGGAGTATAATGTAATCAAATTGCTTCTACTGTAACCTCTTTTTAGCATATGTTCATGAGTGGTGAGGATCCGTAGCACTGCTGGTTGTTAAAGATGTACCTAACCGTATTGCATGTGTATGAAGTGATTGTCAGGAGAAATGAAAGCGAATCTTTTTAATGAATCACAGATACAGCAG

Function

GO:

id name namespace
GO:0006261 DNA-dependent DNA replication biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU374158 True 229 lncRNA 0.39 1 6934949 6935177

Neighbor

gene id symbol gene type direction distance location
LOC113543204 gbas,LOC108413275,LOC102196085,LOC100692767,LOC102291788,LOC102797551 coding upstream 30867 6896246 ~ 6904082 (+)
LOC113543083 axl,LOC107572376,LOC107663740 coding upstream 464838 6434266 ~ 6470111 (+)
LOC113543080 cdkl1,LOC108424097,LOC107551271,LOC107680089,LOC105890602,LOC107598661 coding upstream 535664 6384010 ~ 6399285 (+)
LOC113543329 LOC108280888,LOC108424094,LOC105905016,LOC107680076,LOC107598663,LOC100333863 coding upstream 658839 6274739 ~ 6276110 (+)
LOC113543241 cld3,LOC108424093,LOC103033895 coding upstream 667075 6266493 ~ 6267874 (+)
hnrnpl2 hnrnpl,LOC107730992 coding downstream 10349 6945526 ~ 6958889 (+)
ech1 ech1,LOC107598793,LOC107677099 coding downstream 26766 6961943 ~ 6969948 (+)
LOC113543373 prss16 coding downstream 36375 6971552 ~ 6982646 (+)
meis3 meis3,LOC107677073,LOC107598789,LOC107741525,LOC107726131 coding downstream 62307 6997484 ~ 7008738 (+)
atm atm,LOC106522150 coding downstream 210224 7145401 ~ 7203200 (+)
G315894 NA non-coding upstream 19408 6914261 ~ 6915541 (+)
G315886 NA non-coding upstream 40332 6894337 ~ 6894617 (+)
G315862 NA non-coding upstream 208261 6726474 ~ 6726688 (+)
G315811 NA non-coding upstream 280886 6646145 ~ 6654063 (+)
G315660 NA non-coding upstream 428263 6505940 ~ 6506686 (+)
G315968 NA non-coding downstream 98388 7033565 ~ 7033806 (+)
G316000 NA non-coding downstream 192514 7127691 ~ 7129877 (+)
G316288 NA non-coding downstream 491284 7426461 ~ 7433424 (+)
G316317 NA non-coding downstream 569902 7505079 ~ 7505404 (+)
G316339 NA non-coding downstream 629909 7565086 ~ 7568068 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 707709 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1033383 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 1564052 5341009 ~ 5370897 (+)
trnat-agu_13 NA other upstream 1715331 5219545 ~ 5219618 (+)
kpna4 kpna4,LOC107703033,LOC107750083,LOC107720438,LOC107662578 other upstream 1718358 5201021 ~ 5216591 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other downstream 2163 6937340 ~ 6944990 (+)
G316001 NA other downstream 198282 7133459 ~ 7135501 (+)
crsp7 LOC108280732 other downstream 647136 7582313 ~ 7598164 (+)
G316413 NA other downstream 760357 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 816517 7751694 ~ 7756961 (+)

Expression


Co-expression Network