G316339


Basic Information

Item Value
gene id G316339
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 7565086 ~ 7568068 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU374657
GGCTGTGTGCATTTATTGAAACCTCAGTAACAGACCAACATGTTGCTATCCAGATTTtatccaaaaaacaaaataaggatAATATACCCACAAGACAAGACAGAGGATATGaccaatttttcattttatttgaattagcATGTATCTGAACTATGAGCTGATGGTGGTGGTGACTTGCTTCATTGGGACCAGGGTCTTCAAAGCTTGTAACCAGCTCACACTATCGGAGCCTTCTTGCTTCTCTTTCAGACTCCAGAAGTGTCAGaacatctccctctctcactggGCCCTTCACATTTCTGATGATGGTTCGGTTGCTATCGTCCATGAACTCGACGCGCACTGGGTGCACTGGCCCTGGGAGCCGGTTCTCCCGAGCACTTTAGTGACCTGGAACAGAGGAACAGATTAAACACTCTGCAGAAGATAGCAGACTTTAAACGGCGCACTGGTTTAGCAGAGAGGCTACATACTTCATGTTTTCAGCACACAAGCTAATAACAACGCTGCCAAGAGCAGACGTACACCACACAGCCAAATCTGCCCTAGTGTGTATACATTTCGTTTGTAacgtaaaaaaaatatataattttctgTTCGAAATCTTCTGGCCATATACACGGCTCATAAAACACAACAGCGTGGCTAGCGCCtgcagctagctagttagcccATGAACAGCGTTAGCCTGACACCACCATCACACCCGAATCACACAACCACTTTATACATCGAACAGAGTGGTGCTTGTTCATTTCTATTGgcataaaaacaacaaatgaagTTTTAGCTACTTTATAAATAcgattaaatgtacattttggcCGAAACTAAGCAGTATTTTAAATCATTCTTACTCTGGCGAGCTTGATAGGCTGCACGCGGCTGGCGTCCATGATTTCAGCTTCGCTGGGAAAGGAAGTCACGTGGTGCGAGGAGCCTATATAtacctaaaataaaaatggcattttctccatttattacggtttattttatttatatttcagtgtttaataaatatttgttctcGAATACTCAATATATTTGTGAATTTAAGATATTATTTCTGCGCAAAATAGCGTACAGTTAGTCC
>TU374659
GGCTGTGTGCATTTATTGAAACCTCAGTAACAGACCAACATGTTGCTATCCAGATTTtatccaaaaaacaaaataaggatAATATACCCACAAGACAAGACAGAGGATATGaccaatttttcattttatttgaattagcATGTATCTGAACTATGAGCTGATGGTGGTGGTGACTTGCTTCATTGGGACCAGGGTCTTCAAAGCTTGTAACCAGCTCACTATCGGAGCCTTCTTGCTTCTCTTTCAGACTCCAGAAGTGTCAGaacatctccctctctcactggGCCCTTCACATTTCTGATGATGGTTCGGTTGCTATCGTCCATGAACTCGACGCGCACCTGGGTGCACTGGCCCTGGGAGCCGGTTCTCCCGAGCACTTTAGTGACTCTGGCGAGCTTGATAGGCTGCACGCGGCTGGCGTCCATGATTTCAGCTTCGCTGGGAAAGGAAGTCACGTGGTGCGAGGAGCCTATATAtacctaaaataaaaatggcattttctccatttattacggtttattttatttatatttcagtgtttaataaatatttgttctcGAATACTCAATATATTTGTGAATTTAAGATATTATTTCTGCGCAAAATAGCGTACAGTTAGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU374657 True 1093 lncRNA 0.41 3 7565086 7568068
TU374659 False 625 lncRNA 0.42 4 7565086 7568068

Neighbor

gene id symbol gene type direction distance location
foxl2a foxl2 coding upstream 10161 7553561 ~ 7554925 (+)
rbp2a ret2,rbp2,LOC103044214,LOC108410483,LOC108239352 coding upstream 60389 7500421 ~ 7504697 (+)
LOC117595729 NA coding upstream 71267 7489370 ~ 7493819 (+)
brwd1 brwd1,LOC108280674,LOC108410482,LOC107677081,LOC107567576,LOC107730991,LOC107655817,LOC107747676 coding upstream 75085 7466633 ~ 7490001 (+)
LOC113543091 NA coding upstream 111378 7442104 ~ 7453708 (+)
LOC113543252 LOC108280221 coding downstream 53 7568121 ~ 7575380 (+)
trnau1apb tsp1l,LOC108428349,LOC107680226,LOC107589802,LOC107718075,LOC107722553,LOC107688461,LOC107585172 coding downstream 35293 7603361 ~ 7612784 (+)
lrrc6 lrrc6,LOC108280282 coding downstream 290956 7859024 ~ 7881717 (+)
kcnq3 kcnq3,LOC107749193 coding downstream 315827 7883895 ~ 7935093 (+)
LOC113543381 hhla1 coding downstream 373010 7941078 ~ 7953336 (+)
G316317 NA non-coding upstream 59682 7505079 ~ 7505404 (+)
G316288 NA non-coding upstream 131662 7426461 ~ 7433424 (+)
G316000 NA non-coding upstream 435209 7127691 ~ 7129877 (+)
G315968 NA non-coding upstream 531280 7033565 ~ 7033806 (+)
G315901 NA non-coding upstream 629909 6934949 ~ 6935177 (+)
LOC117599993 NA non-coding downstream 80636 7648704 ~ 7650020 (+)
G316396 NA non-coding downstream 102263 7670331 ~ 7670559 (+)
G316397 NA non-coding downstream 103222 7671290 ~ 7671520 (+)
G316398 NA non-coding downstream 103504 7671572 ~ 7671859 (+)
G316405 NA non-coding downstream 121309 7689377 ~ 7689965 (+)
G316001 NA other upstream 429585 7133459 ~ 7135501 (+)
LOC113543138 LOC108280551,LOC108414043,LOC105006373 other upstream 620096 6937340 ~ 6944990 (+)
G315581 cldnj,LOC108280332,LOC108424024,LOC107749063,LOC107680085,LOC107551261,LOC107703975 other upstream 1337846 6226717 ~ 6227240 (+)
shox2 shox2,LOC107720426,LOC107598669,LOC107703017,LOC107709009,LOC107661335 other upstream 1663520 5894504 ~ 5901566 (+)
si:dkeyp-97b10.3 LOC108280535 other upstream 2194189 5341009 ~ 5370897 (+)
crsp7 LOC108280732 other downstream 14245 7582313 ~ 7598164 (+)
G316413 NA other downstream 127466 7695534 ~ 7695919 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other downstream 183626 7751694 ~ 7756961 (+)
G316744 NA other downstream 695271 8263339 ~ 8264061 (+)
G316745 NA other downstream 700641 8268709 ~ 8269198 (+)

Expression


Co-expression Network