G317027


Basic Information

Item Value
gene id G317027
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8661286 ~ 8661776 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375461
cccatcctcatctgggtgataatgggtagtgcaattgtaaataaatcccttctataactgtgtactacatggacaaatagtgcaattgtgcaaccagtaaattcattagttttcacatgaagtctggtttgttgaacctatccactatccactgatggagacctgagtgcaaaactgttcacaGCAAcccacagccccaaagccaccacagctattgcagtcccaagccatcacagtacaactccccatatgagatccccaagccatctccacggcccccaaACGACACTACTTCCCAATGATCTGCAGGCTGTCCATGTGCTCTagcagcagcaagcgatctccaaccaatgagaactccaaccagaagtagggcatcaggatggatcaggcaggtccagagagcagaaggggtcaggatcactggtatctcaggagtagcctgtgtagctcgacagagagagagggagagattgttaggtaagcttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375461 True 491 lncRNA 0.48 1 8661286 8661776

Neighbor

gene id symbol gene type direction distance location
slc39a6 slc39a6,LOC107749133 coding upstream 3687 8631553 ~ 8657599 (+)
LOC113542997 LOC108270649,LOC108428329 coding upstream 29949 8616397 ~ 8631337 (+)
LOC113543000 LOC108428331 coding upstream 75787 8552247 ~ 8585499 (+)
LOC113543002 LOC108280206 coding upstream 156056 8504015 ~ 8505230 (+)
adhfe1 adhfe1 coding upstream 184314 8467382 ~ 8476972 (+)
gtpbp4 gtpbp4,LOC107721733,LOC107749117,LOC107690210,LOC107659538 coding downstream 5508 8667284 ~ 8678094 (+)
med17 med17 coding downstream 96181 8757957 ~ 8786658 (+)
cavin4a murc,murca,LOC107690354,LOC107749140,LOC107602614,LOC107721748 coding downstream 138921 8800697 ~ 8802910 (+)
urb1 urb1 coding downstream 153990 8815766 ~ 8891958 (+)
LOC113543050 LOC108280424 coding downstream 347425 9009201 ~ 9027258 (+)
G317008 NA non-coding upstream 73075 8587995 ~ 8588211 (+)
G316756 NA non-coding upstream 284193 8376785 ~ 8377093 (+)
G316754 NA non-coding upstream 327755 8332424 ~ 8333531 (+)
G316752 NA non-coding upstream 329500 8331506 ~ 8331786 (+)
LOC113543009 NA non-coding upstream 399574 8259258 ~ 8261712 (+)
G317031 NA non-coding downstream 27659 8689435 ~ 8691471 (+)
G317045 NA non-coding downstream 64565 8726341 ~ 8730818 (+)
G317113 NA non-coding downstream 131938 8793714 ~ 8793944 (+)
G317125 NA non-coding downstream 143494 8805270 ~ 8805725 (+)
G317136 NA non-coding downstream 158448 8820224 ~ 8821893 (+)
G316745 NA other upstream 392088 8268709 ~ 8269198 (+)
G316744 NA other upstream 397225 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 904325 7751694 ~ 7756961 (+)
G316413 NA other upstream 965367 7695534 ~ 7695919 (+)
crsp7 LOC108280732 other upstream 1063122 7582313 ~ 7598164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 149819 8811595 ~ 8813410 (+)
G317390 NA other downstream 750547 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1297217 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 1874655 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 1902045 10563821 ~ 10568907 (+)

Expression


Co-expression Network