G317031


Basic Information

Item Value
gene id G317031
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8689435 ~ 8691471 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375465
ACGATATTTGTGTGGCCTAAGTGCTCATTGCAAAAAGACGGAACATCGGCTAGAACATGGAATATCTGCTAAAGAACTATACATAGCTTATCTTTGACCTCAATTTCACTCCAAGTACtgaggtgtacctaataaagcaATGTCTAAAGAAATCTGAACAGAGTCAGAAAGATTCAGCTCAAGCTATGACTCATTTACAGTACtgtcttaggcacccttttttttagtacaaactttgttatagatttttattttatgacctctacattattgattcagtacaaaaactttttagatttccaaacattagtttttcagcacaaaattgttacagaaaaatgtttgtatgtcagtaaagaaagcagcacttttcagacaaaaagacataatgaaggctgctgggttttgctgcaaaaataagaagcaagtgtgacagtctaagtctccagaagaactgtggctggttctgcaagatgacagtaacacttacagctaatttccttataaaacagcacaaattgtacctgagactactacatatattttttttaaagcgaaagatcgtcacaccaaatattgacttgaagtttcatttattactgtttactgctctttatagttttttttaaatgtagaaacatttaatttcattatttttgaaggcatctttgctctacagcatttctttgcatgtgcctaagacttttgtacagtactgtatatacagttcTGTTATTCATATTAGCcaataacatacagtacatgcagaGTTAGTGGCTGTGTCACTGAACATTCAAGAAAGGCTGGACCCTGTAATGGAAAGTCCAGGTCAAACAAAACCCTACTAGCAGTTTGGGACTCATTAAAATCATTGCATTGCACTAAAAATGTGCACCCTACAGCAGGGCTTCAGGTTTGAATCTGAGCTATGTCACATAGCCATGAATAAGATTAACTGAAGATGCAAAAGGAAAGGCACTTAATGATCAATAATTAGCACCTCTTCACACCTCCAACTCTCCACTTTTAAAAGATGTGTTTTTGCTGCTGTCTTATTCCAACTTTCAGTTAAAGCCCAATGGTCTAAATTTAACCAACCCAGAGGATGAGATCATTGTGGTCCACTTTACCATCTATGGAATGCTAACACAAGTATAACATttcttatatattataatgtaatatttctcAATGTAAAAAATAACTAATTACAATATTGCCAACTGTACTGAAGGTCAATCAAGACATGTTTGTGCTGACCTCAACAGAGGCACTGATGAATATATTTCTGAGCCAAAGTACAATGCAAATCTACTGAACATGTTAATATTCACAACACTGATCTAATAAGCCATGCTGGGTGCAGCTGAACCATTTCTATTGCTATGTCTCAGAGACAAcatcaaagttattattattattattattattattcataataatcatcatcattattactaCACAGAATAAAATACATCTAACACTATATTATAAACAGAGTGGGAATTCCCTACTACTGGCCCATACttagataataatataagtaataatataaatataacataaacaTCATTATAGTCTTTTTCTATAGTcattataatctttttttaacttcattttcTATTCCATAGCCATATGTTCCTTCATTGTACACTATTGTCAGGTGCTCTTCTAGACCCGATGCTTTACTAATTGAAAAGAAAATCGTAATTTGGTTCTACAGAATTGTTAGTGGATAGACTCTTGAATTACAAAGATATAGAATAGAAAAATGTGTACAAGTGAGTAATTGAACAGTGAGGAGTGACTttgtatgtaacattttttcTGGTTATGTTGCTTCTTTGAGAGACCAACCTTACAATCTCCTGAATAGTAGACAGCGTACAAAGAGAAGTGACCACAGGCATTAGAAAGCTAACAAATTTGGGCATAGTGATGCACATTTGCACATACTTGAGTTACCTGAATGATTAATTCAATGATTCACTTCTGCttatgtgactgtgtgtatgagtgtctgTTAGACCGTGTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375465 True 2037 lncRNA 0.34 1 8689435 8691471

Neighbor

gene id symbol gene type direction distance location
gtpbp4 gtpbp4,LOC107721733,LOC107749117,LOC107690210,LOC107659538 coding upstream 11341 8667284 ~ 8678094 (+)
slc39a6 slc39a6,LOC107749133 coding upstream 31836 8631553 ~ 8657599 (+)
LOC113542997 LOC108270649,LOC108428329 coding upstream 58098 8616397 ~ 8631337 (+)
LOC113543000 LOC108428331 coding upstream 103936 8552247 ~ 8585499 (+)
LOC113543002 LOC108280206 coding upstream 184205 8504015 ~ 8505230 (+)
med17 med17 coding downstream 66486 8757957 ~ 8786658 (+)
cavin4a murc,murca,LOC107690354,LOC107749140,LOC107602614,LOC107721748 coding downstream 109226 8800697 ~ 8802910 (+)
urb1 urb1 coding downstream 124295 8815766 ~ 8891958 (+)
LOC113543050 LOC108280424 coding downstream 317730 9009201 ~ 9027258 (+)
LOC113543049 LOC108280422 coding downstream 342098 9033569 ~ 9163194 (+)
G317027 NA non-coding upstream 27659 8661286 ~ 8661776 (+)
G317008 NA non-coding upstream 101224 8587995 ~ 8588211 (+)
G316756 NA non-coding upstream 312342 8376785 ~ 8377093 (+)
G316754 NA non-coding upstream 355904 8332424 ~ 8333531 (+)
G316752 NA non-coding upstream 357649 8331506 ~ 8331786 (+)
G317045 NA non-coding downstream 34870 8726341 ~ 8730818 (+)
G317113 NA non-coding downstream 102243 8793714 ~ 8793944 (+)
G317125 NA non-coding downstream 113799 8805270 ~ 8805725 (+)
G317136 NA non-coding downstream 128753 8820224 ~ 8821893 (+)
LOC117599967 NA non-coding downstream 206798 8898269 ~ 8899873 (+)
G316745 NA other upstream 420237 8268709 ~ 8269198 (+)
G316744 NA other upstream 425374 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 932474 7751694 ~ 7756961 (+)
G316413 NA other upstream 993516 7695534 ~ 7695919 (+)
crsp7 LOC108280732 other upstream 1091271 7582313 ~ 7598164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other downstream 120124 8811595 ~ 8813410 (+)
G317390 NA other downstream 720852 9412323 ~ 9415164 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 1267522 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 1844960 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 1872350 10563821 ~ 10568907 (+)

Expression


Co-expression Network