G317123


Basic Information

Item Value
gene id G317123
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8800282 ~ 8800516 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375599
TTGAGGGTGGAACAGTGTTACatactgatttttttatgtgtgtatgcttgAATGGTTAATTTTATCTGCACAAACACCACCCGACCCTTGGGAATACTTAACTAACTCAATTGAAGTCAGCAGCTGCAGCTAcctcacacactgtaacatgACCTCATGAGTATTTCTGCACTCTGACATTTAAGGACTACACATCCCAATGTACTCCCTGATTGTGGGGTCAATGTGATATGGG

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption
ko04979 Cholesterol metabolism
ko04977 Vitamin digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU375599 True 235 lncRNA 0.42 1 8800282 8800516

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 42254 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 86024 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 112351 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 248274 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 620181 8155454 ~ 8180101 (-)
epc1b LOC108280341,LOC108442943 coding upstream 615673 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 851059 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 915429 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 1074267 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 1134707 9935223 ~ 9942312 (-)
G317059 NA non-coding downstream 122194 8677189 ~ 8678088 (-)
G317076 NA non-coding downstream 136553 8663520 ~ 8663729 (-)
G317062 NA non-coding downstream 202205 8597872 ~ 8598077 (-)
G317010 NA non-coding downstream 211194 8588773 ~ 8589088 (-)
G316977 NA non-coding downstream 257911 8542129 ~ 8542371 (-)
G317128 NA non-coding upstream 2935 8803451 ~ 8805013 (-)
G317129 NA non-coding upstream 4607 8805123 ~ 8806057 (-)
G317134 NA non-coding upstream 14245 8814761 ~ 8814979 (-)
G317173 urb1 non-coding upstream 44809 8845325 ~ 8855465 (-)
LOC117599966 NA non-coding upstream 96613 8897129 ~ 8898577 (-)
vcpip1 vcpip1 other downstream 311653 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1232148 7565081 ~ 7568134 (-)
limk1a limk1,LOC107663742 other downstream 2150887 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 3578447 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 3579266 5220943 ~ 5221016 (-)
G317176 NA other upstream 83133 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 103308 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 168688 8969204 ~ 8973275 (-)
ccl20a.3 LOC108261059 other upstream 1726766 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2819360 11619876 ~ 11705877 (-)

Expression


Co-expression Network