G317128


Basic Information

Item Value
gene id G317128
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8803451 ~ 8805013 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375604
CAGCAGtctaaaagaaaggaaaacacaagTCAAggattttttaatataatagtaGATAAACAAAGTGCTAATTCAAGTGCTTAGTGAAGAGGTAGgacattagttttttttttgaagacagccagtgagtCTGCCATGGGGACTCTGCCAGGAGGAGTTCATTCCACCTCTTGGTTGCCAGGACAGAGTCTTGATGCATATTCTCCTTTTACCTTGAGAACTGGTTCCAGTCGATCCATGGTAGAGGCTCAGAGGGAACGTGGTGCAGAGCAGGGTGTGGtaagtgctttaaggtaggtAGGTTTTATAGGCAAACATCAGTGTTTTCTGAtccaggcagctacaggaagccaatgGAGGGAGCATAACAATGGAGTAGGAGAGCTTGGAGAGGTTGATAGCagttcattcagtcattcagctgcattctggatcagttgcagggATCAGATGGGGTTCAGGGGCAAACTTGCCAGGAGTTAacgctaacttttttttttgtcattcaacttttttattttaaacttgtattaCCCACAAAACATagaatacacaaacacaactaCAAACAATGAATATttaaggataataataataaaataaataataaaagcaataataaaaataacaatataataaaacaaacaaccaaaatgACAGCACGACAAACCATTCCTCTACTTGTTTTCCAGATAATACAAAAACCTACCCCATCTCTGATTGAAAACATAGGTGGAGTCCTGAAGTTTTGCCAGCATTCGCTCATATGATGCGTTAGAATTCATAAGTTCAATCCAATCCTTGAAAGAGGGAGTGTCTGAGTTCTTCCAATTTTGCAGCACCAATCTCACAGTCGTAATTCATACAGCAACAGCCAGCCCAGCCTGCACTTTAGATATCTCCATCTGTAGAACAGTTGTATCTCCAAGAAGACAAAATCTTGGAGAACAAGGTAGAGGCTGCTCCATCCACTCCTCAATGGTCTGAATAACTCTTGTCCAGAATGGAGCCACCAAATGACAATCCCACATTAAGTGTAGATAAGTGCCAGTAGAACGACCACATTTCCAACACATGTGACAATGACCCTAAGTGAGTGGCCTATGAAAGGGCTTTGGTATGTTATGTTCATCCTCTGGTCATTCTCATCAACCCCAGTCTTAGAACCTGCCATTAGAGCCATGGTTACACATGCAACCTGCCATTTTTCTGAATGCTTTTTTGTCAAATCATTTTTTGTTGtaactaaataataaagtagtaataaaatgtttccttttgcaAATATTAGGGAAtcagtgtatattaatgcaaacaaaacaatttatttatagtttcagtgtgatttatagtttctatagtttgtggtgtttttgtgtttggtagttattaacaaacaaatactTTTGGATTTTCTATATTTGTGCTTAGAATGTGTACCTTCTATGTTTCAGACAAATCATTAATGAAACCCTCCCTAAAAATCTTGTGCCACAGTTCTACCACATACAACCTCTGTAAAGAGTCAATCAAATAAGAAAGAAGTGACTACCCAAAGTATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375604 True 1563 lncRNA 0.38 1 8803451 8805013

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 45423 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 89193 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 115520 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 251443 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 623350 8155454 ~ 8180101 (-)
epc1b LOC108280341,LOC108442943 coding upstream 611176 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 846562 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 910932 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 1069770 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 1130210 9935223 ~ 9942312 (-)
G317123 NA non-coding downstream 2935 8800282 ~ 8800516 (-)
G317059 NA non-coding downstream 125363 8677189 ~ 8678088 (-)
G317076 NA non-coding downstream 139722 8663520 ~ 8663729 (-)
G317062 NA non-coding downstream 205374 8597872 ~ 8598077 (-)
G317010 NA non-coding downstream 214363 8588773 ~ 8589088 (-)
G317129 NA non-coding upstream 110 8805123 ~ 8806057 (-)
G317134 NA non-coding upstream 9748 8814761 ~ 8814979 (-)
G317173 urb1 non-coding upstream 40312 8845325 ~ 8855465 (-)
LOC117599966 NA non-coding upstream 92116 8897129 ~ 8898577 (-)
G317175 NA non-coding upstream 153796 8958809 ~ 8959053 (-)
vcpip1 vcpip1 other downstream 314822 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1235317 7565081 ~ 7568134 (-)
limk1a limk1,LOC107663742 other downstream 2154056 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 3581616 5221762 ~ 5221835 (-)
trnat-agu_15 NA other downstream 3582435 5220943 ~ 5221016 (-)
G317176 NA other upstream 78636 8883649 ~ 8885709 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 98811 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 164191 8969204 ~ 8973275 (-)
ccl20a.3 LOC108261059 other upstream 1722269 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2814863 11619876 ~ 11705877 (-)

Expression


Co-expression Network