LOC117599966


Basic Information

Item Value
gene id LOC117599966
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8897129 ~ 8898577 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375679
TTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCCACTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAATAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGACCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGGTAGTTTGTCTTatgtgatttaattttttttaaattgttttatattggtatttaaaatgtgttgattaTGTACTTGTATTTGTAGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGCGGGGAGTATTGAATACTCTTGCAAAGTAGGCCAATACTTCTTGTATATGTTGGTTTTATGTGTGCTGGTGAATGAAATTGGGgattaatgtgtattatttctttttaaagggaCCAGGCCAGCCACTGTTCTATTGTCAGTGTACAagtctttttttagtttgtttgttggttgttttgtttgcctttggctttgtcctttttttttttttttgtccttggtCTAGTGTAACCCTGCCTTGACCAAGCCAGCGCGGTGGTCATTGTGTTGGGAGCTGGCTGTTctcctctttttgtctctgtataGGTTCTCTGTACAAGGCCGGATCTGCACCTCATTACTGCTCCTTTCAGTTGGGGGCTGCACTGAGGGGACACTATTTTGGTGTGTACTGGTAACATGCAACACGGTGTGGTATTTTGTAGTGGTAATTACTGaccttgtgtgtgcagtgtttgctATGTTGCATGCTTGTATGGTGTTGGGTttgttgtgtctgtctctctcatcagGGCCTCCTAGGAGAGGAGCTGTGGGTGCCGTGCCGACCCGACCTTATTAGTTTGAGAAGCTCCAGCCAGTTTCCCTTCGTCTCTTTTTCACATTAGCAATTGTACCTattcaaaattgtaataaatttgaGCTTGTG
>XR_004580312.1
aaaaaaaacaaaacaaaaagggtCGGCTTTTCCATAATCTTGGGGCTGCAACAGAAAAAGCCTGGTCACCTTTAAACCTCATTTGAGTATGAGTAATAGTTAAAAGAATTGATGTGAATGCTAGAGCTAGAATAAGCACAGAGGATATAGATATGGTGCTATAGATATAGATACAGCTTGGTACTATGCTTtgaaaacatataataaaacGTTGAACTATATTCTGTATATGAATGATAACCAGTGAAGGATGACCAAAACAGAGACCTTTTTCTGGTGCTGGTGTGGGGATCTGTGTTTTCGTGTTGGTGGTTACCTGCACTGATAATCAGTGTGGGGATCATGTGATCTGCATTGTGTGGCTGCTTGTCCTGGGTCACATGAggcatgtcacatgacacatTAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCCACTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAATAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGACCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGGTAGTTTGTCTTatgtgatttaattttttttaaattgttttatattggtatttaaaatgtgttgattaTGTACTTGTATTTGTAGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGCGGGGAGTATTGAATACTCTTGCAAAGTAGGCCAATACTTCTTGTATATGTTGGTTTTATGTGTGCTGGTGAATGAAATTGGGgattaatgtgtattatttctttttaaagggaCCAGGCCAGCCACTGTTCTATTGTCAGTGTACAagtctttttttagtttgtttgttggttgttttgtttgcctttggctttgtcctttttttttttttttgtccttggtCTAGTGTAACCCTGCCTTGACCAAGCCAGCGCGGTGGTCATTGTGTTGGGAGCTGGCTGTTctcctctttttgtctctgtataGGTTCTCTGTACAAGGCCGGATCTGCACCTCATTACTGCTCCTTTCAGTTGGGGGCTGCACTGAGGGGACACTATTTTGGTGTGTACTGGTAACATGCAACACGGTGTGGTATTTTGTAGTGGTAATTACTGaccttgtgtgtgcagtgtttgctATGTTGCATGCTTGTATGGTGTTGGGTttgttgtgtctgtctctctcatcagGGCCTCCTAGGAGAGGAGCTGTGGGTGCCGTGCCGACCCGACCTTATTAGTTTGAGAAGCTCCAGCCAGTTTCCCTTCGTCTCTTTTTCACATTAGCAATTGTACCTattcaaaattgtaataaatttgaGCTTGTGTACA
>XR_004580313.1
aaaaaaaacaaaacaaaaagggtCGGCTTTTCCATAATCTTGGGGCTGCAACAGAAAAAGCCTGGTCACCTTTAAACCTCATTTGAGTATGAGTAATAGTTAAAAGAATTGATGTGAATGCTAGAGCTAGAATAAGCACAGAGGATATAGATATGGTGCTATAGATATAGATACAGCTTGGTACTATGCTTtgaaaacatataataaaacGTTGAACTATATTCTGTATATGAATGATAACCAGTGAAGGATGACCAAAACAGAGACCTTTTTCTGGTGCTGGTGTGGGGATCTGTGTTTTCGTGTTGGTGGTTACCTGCACTGATAATCAGTGTGGGGATCATGTGATCTGCATTGTGTGGCTGCTTGTCCTGGGTCACATGAggcatgtcacatgacacatTAGGAGATTATAAAGTTTGGCTTGTGGAGTTCACACTCTCTTGCTGCTGCCATTTGCCACTGCAACTAGACTCCCGTCATACAGGGTGACTGCTAGAATAATGTGTTCCACTCTTCATGAAGGACACAGGTGACTGCGTGGCATTTGAAGGACTTGTGACCTCCTATTGAGTTGCTGGGCTGCAGACACTCTGCACTGGAGTGCCCCATTTTATCTTCCTGGGTTATTGTGCTGCGGGGAGTATTGAATACTCTTGCAAAGTAGGCCAATACTTCTTGTATATGTTGGTTTTATGTGTGCTGGTGAATGAAATTGGGgattaatgtgtattatttctttttaaagggaCCAGGCCAGCCACTGTTCTATTGTCAGTGTACAagtctttttttagtttgtttgttggttgttttgtttgcctttggctttgtcctttttttttttttttgtccttggtCTAGTGTAACCCTGCCTTGACCAAGCCAGCGCGGTGGTCATTGTGTTGGGAGCTGGCTGTTctcctctttttgtctctgtataGGTTCTCTGTACAAGGCCGGATCTGCACCTCATTACTGCTCCTTTCAGTTGGGGGCTGCACTGAGGGGACACTATTTTGGTGTGTACTGGTAACATGCAACACGGTGTGGTATTTTGTAGTGGTAATTACTGaccttgtgtgtgcagtgtttgctATGTTGCATGCTTGTATGGTGTTGGGTttgttgtgtctgtctctctcatcagGGCCTCCTAGGAGAGGAGCTGTGGGTGCCGTGCCGACCCGACCTTATTAGTTTGAGAAGCTCCAGCCAGTTTCCCTTCGTCTCTTTTTCACATTAGCAATTGTACCTattcaaaattgtaataaatttgaGCTTGTGTACA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process

KEGG:

id description
ko05165 Human papillomavirus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU375679 False 954 lncRNA 0.43 2 8897133 8898159
XR_004580312.1 True 1376 lncRNA 0.42 2 8897129 8898577
XR_004580313.1 False 1291 lncRNA 0.43 3 8897129 8898577

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 139101 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 182871 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 209198 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 345121 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 717028 8155454 ~ 8180101 (-)
epc1b LOC108280341,LOC108442943 coding upstream 517612 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 752998 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 817368 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 976206 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 1036646 9935223 ~ 9942312 (-)
G317173 urb1 non-coding downstream 41664 8845325 ~ 8855465 (-)
G317134 NA non-coding downstream 82150 8814761 ~ 8814979 (-)
G317129 NA non-coding downstream 91072 8805123 ~ 8806057 (-)
G317128 NA non-coding downstream 92116 8803451 ~ 8805013 (-)
G317123 NA non-coding downstream 96613 8800282 ~ 8800516 (-)
G317175 NA non-coding upstream 60232 8958809 ~ 8959053 (-)
LOC113543052 NA non-coding upstream 144775 9043352 ~ 9072872 (-)
G317314 NA non-coding upstream 177887 9076464 ~ 9077234 (-)
LOC113543051 NA non-coding upstream 194617 9093194 ~ 9113004 (-)
G317328 NA non-coding upstream 209523 9108100 ~ 9108493 (-)
G317176 NA other downstream 11420 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 408500 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1328995 7565081 ~ 7568134 (-)
limk1a limk1,LOC107663742 other downstream 2247734 6593269 ~ 6649395 (-)
trnat-agu_16 NA other downstream 3675294 5221762 ~ 5221835 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other upstream 5247 8903824 ~ 8954110 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other upstream 70627 8969204 ~ 8973275 (-)
ccl20a.3 LOC108261059 other upstream 1628705 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2721299 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 4009876 12908453 ~ 12928071 (-)

Expression


Co-expression Network