LOC113542985 (crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815)


Basic Information

Item Value
gene id LOC113542985
gene name crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 8969204 ~ 8973275 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375761
aaaaagagaagagactTAAGAGTGTGTCACAAGCCAAACTAAGAAATAGAGTGAGTGTAAAACCCTCAGCTGAAAGGCAaacacatcaaaacacaaactctctctgagggagacagagaggaaaagggATACAAGTAGAGTTGATACAGATAGGAGATAAACACGGAAGCACCACTGGATTATTACACTATAGACATGGCAGTGACGGGAGACGAAACAGAATCAGCCGCTACAGGAGACATGCCTGCATGTCACATCCGGTCCTCATCGTCAGGGCTTCCACAAAGTATGGTCATGGCTGCATCACCGGGGGAAATCCACAGTCCGCAGCAACAAGCAGAGGAGGCTACACGCAAACGAGAGGTTCGCCTGATGAAGAACCGGCAGGCAGCACGAGAGTGCCGTCGGAAGAAGAAAGAATATGTGAAGTGTCTGGAGAATCGCGTTGCTGTGCTGGAAAACCAGAACAAAACACTAATAGAGGAACTCAAAGCTCTCAAAGACATTTACTGCCACAAGCCTGAGTaacatatatacagacagacagacacacacacaaacacacactccaaattAATCACATGTTTAAAGACTGATCCTTAAACACCTACTGCAACAGAGG
>XM_026940859.2
TAATTGTAATctggctgagagagagaaaagggagagagggaggagatgagagagaggggaaaaagagaagagactTAAGAGTGTGTCACAAGCCAAACTAAGAAATAGAGTGAGTGTAAAACCCTCAGCTGAAAGGCAaacacatcaaaacacaaactctctctgagggagacagagaggaaaagggATACAAGTAGAGTTGATACAGATAGGAGATAAACACGGAAGCACCACTGGATTATTACACTATAGACATGGCAGTGACGGGAGACGAAACAGAATCAGCCGCTACAGGAGACATGCCTGCATGTCACATCCGGTCCTCATCGTCAGGGCTTCCACAAAGTATGGTCATGGCTGCATCACCGGGGGAAATCCACAGTCCGCAGCAACAAGCAGAGGAGGCTACACGCAAACGAGAGGTTCGCCTGATGAAGAACCGGCAGGCAGCACGAGAGTGCCGTCGGAAGAAGAAAGAATATGTGAAGTGTCTGGAGAATCGCGTTGCTGTGCTGGAAAACCAGAACAAAACACTAATAGAGGAACTCAAAGCTCTCAAAGACATTTACTGCCACAAGCCTGAGTaacatatatacagacagacagacacacacacaaacacacactccaaattAATCACATGTTTAAAGACTGATCCTTAAACACCTACTGCAACAGAGGTTTACAGACTACCCAGAATCAGGAATAACTTCTGCTTGTGTATGCTCTgaattgctttttattttatgtatgttttgttgttttatttcatgaaacacacacattaaattgAAACATGTACGTTTGGAAGCCAACTGTGGAAGTCATTCacaacaaagacacacaaacatgaaagcTGTGTTGAATTGAATGTTGCATTCTCACTCCATTCTTGACATTCCTGTGTTTTCTGAGTGAAAAGCAATGTATGTAGTTATTTGGAAAGCATGTCATTACTAAACATGGACCATTTTAAGCCAAATAATACCTGCCAGATTGGAAGTGATTGTTGGGGTGTTTGTATTGGCTGCCTTCTCTCACCTCTTTGTGTATCTACTGTAGCATTCTCCTAAGAACCAGGCTATTATGTTCTCACTCAGTAGATGTTTGCCTAATCATGATTGGGCCCTGCAGGTGTAATgtgatttgaatatttaaatatgggTTTGGGTTGTTTTGCTGTAAGTGGAGAAGTGAAAGTGTTTcttcatattaatgaattaaagaaaatggtTGTATATCCCTTTGTATATTTAAA
>XM_026940861.2
CCCTTAGAGCCCGAACAGATCTGCAAGGATTTCTTCAGCTCAGACTGCATTACATGTTTTACCAATAAAGGTATAATGATTAAGTAGAGAATATTGTACATTCTATTCTAATGACTTTTAGTTTAAATGCCTCCAcccccaaacacaaacatacacactcattaaaacTTCTGGAGGCAACACTGTTTACTAAATCAAGCCCCCTAAACCCATGAACCAGAGAAAGACAGtggaagaagaaagaggaaggggACGGGAGTTCTTTTCTGATGACGTCAGTAAATTTCCTGGAAGTAGAAGTAGATCATGAGGGGGAATGTGAGAGCAGTAGAGAGGGGaggggagacagagaaaggacGCACACAGTGACCCGCTACAGGAGACATGCCTGCATGTCACATCCGGTCCTCATCGTCAGGGCTTCCACAAAGTATGGTCATGGCTGCATCACCGGGGGAAATCCACAGTCCGCAGCAACAAGCAGAGGAGGCTACACGCAAACGAGAGGTTCGCCTGATGAAGAACCGGCAGGCAGCACGAGAGTGCCGTCGGAAGAAGAAAGAATATGTGAAGTGTCTGGAGAATCGCGTTGCTGTGCTGGAAAACCAGAACAAAACACTAATAGAGGAACTCAAAGCTCTCAAAGACATTTACTGCCACAAGCCTGAGTaacatatatacagacagacagac
>XM_026940863.2
CTTTAATTGTAATctggctgagagagagaaaagggagagagggaggagatgagagagaggggaaaaagagaagagactTAAGAGTGTGTCACAAGCCAAACTAAGAAATAGAGTGAGTGTAAAACCCTCAGCTGAAAGGCAaacacatcaaaacacaaactctctctgagggagacagagaggaaaagggATACAAGTAGAGTTGATACAGATAGGAGATAAACACGGAAGCACCACTGGATTATTACACTATAGACATGGCAGTGACGGGAGACGAAACAGAATCAGgTGGGTGGTCATATAGCCGCTACAGGAGACATGCCTGCATGTCACATCCGGTCCTCATCGTCAGGGCTTCCACAAAGTATGGTCATGGCTGCATCACCGGGGGAAATCCACAGTCCGCAGCAACAAGCAGAGGAGGCTACACGCAAACGAGAGGTTCGCCTGATGAAGAACCGGCAGGCAGCACGAGAGTGCCGTCGGAAGAAGAAAGAATATGTGAAGTGTCTGGAGAATCGCGTTGCTGTGCTGGAAAACCAGAACAAAACACTAATAGAGGAACTCAAAGCTCTCAAAGACATTTACTGCCACAAGCCTGAGTaacatatatacagacagacagac
>XM_026940864.2
CCTTTAATTGTAATctggctgagagagagaaaagggagagagggaggagatgagagagaggggaaaaagagaagagactTAAGAGTGTGTCACAAGCCAAACTAAGAAATAGAGTGAGTGTAAAACCCTCAGCTGAAAGGCAaacacatcaaaacacaaactctctctgagggagacagagaggaaaagggATACAAGTAGAGTTGATACAGATAGGAGATAAACACGGAAGCACCACTGGATTATTACACTATAGACATGGCAGTGACGGGAGACGAAACAGAATCAGAGAAAGACAGtggaagaagaaagaggaaggggACGGGAGTTCTTTTCTGATGACGTCAGTAAATTTCCTGGAAGTAGAAGTAGATCATGAGGGGGAATGTGAGAGCAGTAGAGAGGGGaggggagacagagaaaggacGCACACAGTGACCCGCTACAGGAGACATGCCTGCATGTCACATCCGGTCCTCATCGTCAGGGCTTCCACAAAGTATGGTCATGGCTGCATCACCGGGGGAAATCCACAGTCCGCAGCAACAAGCAGAGGAGGCTACACGCAAACGAGAGGTTCGCCTGATGAAGAACCGGCAGGCAGCACGAGAGTGCCGTCGGAAGAAGAAAGAATATGTGAAGTGTCTGGAGAATCGCGTTGCTGTGCTGGAAAACCAGAACAAAACACTAATAGAGGAACTCAAAGCTCTCAAAGACATTTACTGCCACAAGCCTGAGTaacatatatacagacagacagac
>XM_026940865.2
CCTTTAATTGTAATctggctgagagagagaaaagggagagagggaggagatgagagagaggggaaaaagagaagagactTAAGAGTGTGTCACAAGCCAAACTAAGAAATAGAGTGAGTGTAAAACCCTCAGCTGAAAGGCAaacacatcaaaacacaaactctctctgagggagacagagaggaaaagggATACAAGTAGAGTTGATACAGATAGGAGATAAACACGGAAGCACCACTGGATTATTACACTATAGACATGGCAGTGACGGGAGACGAAACAGAATCAGCCCTTAGAGCCCGAACAGATCTGCAAGGATTTCTTCAGCTCAGACTGCATTACATGTTTTACCAATAAAGAGAAAGACAGtggaagaagaaagaggaaggggACGGGAGTTCTTTTCTGATGACGTCAGTAAATTTCCTGGAAGTAGAAGTAGATCATGAGGGGGAATGTGAGAGCAGTAGAGAGGGGaggggagacagagaaaggacGCACACAGTGACCCGCTACAGGAGACATGCCTGCATGTCACATCCGGTCCTCATCGTCAGGGCTTCCACAAAGTATGGTCATGGCTGCATCACCGGGGGAAATCCACAGTCCGCAGCAACAAGCAGAGGAGGCTACACGCAAACGAGAGGTTCGCCTGATGAAGAACCGGCAGGCAGCACGAGAGTGCCGTCGGAAGAAGAAAGAATATGTGAAGTGTCTGGAGAATCGCGTTGCTGTGCTGGAAAACCAGAACAAAACACTAATAGAGGAACTCAAAGCTCTCAAAGACATTTACTGCCACAAGCCTGAGTaacatatatacagacagacagac

Function

symbol description
crema Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex. Is expressed in brain. Orthologous to human CREM (cAMP responsive element modulator).
crem Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm and nucleus. Predicted to be part of ATF4-CREB1 transcription factor complex and chromatin.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375761 False 622 TUCP 0.46 3 8969781 8973212
XM_026940859.2 True 1258 mRNA 0.41 3 8969204 8973271
XM_026940861.2 False 693 mRNA 0.46 3 8969854 8972811
XM_026940863.2 False 627 mRNA 0.47 3 8969854 8973274
XM_026940864.2 False 762 mRNA 0.48 4 8969854 8973275
XM_026940865.2 False 832 mRNA 0.47 5 8969854 8973275

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 211176 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 254946 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 281273 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 417196 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 789103 8155454 ~ 8180101 (-)
epc1b LOC108280341,LOC108442943 coding upstream 442914 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 678300 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 742670 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 901508 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 961948 9935223 ~ 9942312 (-)
G317175 NA non-coding downstream 10151 8958809 ~ 8959053 (-)
LOC117599966 NA non-coding downstream 70627 8897129 ~ 8898577 (-)
G317173 urb1 non-coding downstream 113739 8845325 ~ 8855465 (-)
G317134 NA non-coding downstream 154225 8814761 ~ 8814979 (-)
G317129 NA non-coding downstream 163147 8805123 ~ 8806057 (-)
LOC113543052 NA non-coding upstream 70077 9043352 ~ 9072872 (-)
G317314 NA non-coding upstream 103189 9076464 ~ 9077234 (-)
LOC113543051 NA non-coding upstream 119919 9093194 ~ 9113004 (-)
G317328 NA non-coding upstream 134825 9108100 ~ 9108493 (-)
LOC117600002 NA non-coding upstream 169466 9142741 ~ 9154243 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 15094 8903824 ~ 8954110 (-)
G317176 NA other downstream 83495 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 480575 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1401070 7565081 ~ 7568134 (-)
limk1a limk1,LOC107663742 other downstream 2319809 6593269 ~ 6649395 (-)
ccl20a.3 LOC108261059 other upstream 1554007 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2646601 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 3935178 12908453 ~ 12928071 (-)
ccl25a NA other upstream 4639241 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 4691906 13665181 ~ 13680110 (-)

Expression


Co-expression Network