G317367 (itgb1,itgb1b,LOC107659805,LOC108442929)


Basic Information

Item Value
gene id G317367
gene name itgb1,itgb1b,LOC107659805,LOC108442929
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9212999 ~ 9219089 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375867
tttattttaataaataactacTGAAACAAAGGATCATAAGCGTGAATATGATGCAGAAATAAAAGGTACTTTTAAAATGCAGTCTGTGAGGCATGTGGTTTTAAGATTCAACACTATTAAAAGACAGTGAAGATTAGAAATAATTCTCATTGAACAATCTTTAACAATTATTGCATAACAATTGATTGCACCTCGTCCTGCAAGCTTAGGCTCGAGGAAGATTGATATTTAGACAGCAGTGAATAAAATATAGTTCAATACAAACTAAGCAAGTTCTCCAAGACCACTTCTGGTAACAGACTTAGCATAACGAAAATAATGCTCCTCTAGGTTTTGCACAAAAGACAGTAAGTATTTGGTTTTATGATCAAAAGAAATTAGAAACCTGAGCATCAAATTTTTGAAGACTTAAGTTATTATACACatagtatatatttatgttgtttGATTGCTAAACATCTTTCTGAATACATTCAAATGAATTCTACTGTTGTTCATGTCCCTGAGATGCACCCACATTCAGGTCAAAGTTTCATATTCAAAGAGTTTAAGATCCTGTCCACTACACAATAGTGCCACTGTACTCAAATCTACTCATAATGCAATTCCATGTTTCTTGACAGTGTTGATGAGATACtggacattttcttcttttgaaCCATAAAACGCTGATCTGTGTAGACGTTCAGAATGATTGGCAAGGCAATGTCcttttaaaacatgaatatatAAACCTATTGAGTGCATCTCAGAAAGTATATCCACATAAAGGAGGCAGCCCTAACTTTCCTGTAAGTGGATCCGCAGCctccaaaaaacacacagggCTACATGCAGAATACATAGAATACACATCTATGAGTAGAAGCCTTCTCCAGTGCACCTTTTCTTGTATTTCAGCTTCTAACATAGCCGAATCATCAGGCGTGTagggaaaaagggaaaaaaagctaattGGGGGTCCACAATGACTGAATTAGGAACACAGCACCACACACTTCCAAACCAGTGGCCAGCTACATGCTACACCAGTGacaaatttttctttaaatcacatttcattATTCAATCATCATAAATAATACCTGTCAAGCTTACAGGgttcattaaaatgtgttttcattaaTAAGACCTAAACAGGTGTTTGACACTGAACCATTAATGTGACTTGGTTTGAAATCCATTATCAGTGTTTCTCAGTCCTGATCACAAAGCACAACTGAAATGCACATGTGCTTTCCTGGATTtaccatatatattttttcaacaaATTAGTTAGGGAGTGTCAAGagaacactaaaatgtgcagtgcaGGAGTTGTCTGGGACTAGAACTGGAAAACGATACAACAGCATGAAATGACTCTATTCCAAGACCAAATCCAGTCCCGTGACAAcacaaatattaagaaaaaaatattaaaacagttaGAAAACACAATGCATTCAGTACACAATACATAGAAATACAAAATAAGTAGATTATAATGCAAGTTGTGGAGAATGCACAGCTAGcaaaatgtgtgttaaaaacaaaaaacaaaacttctcCTTTGCTCCTGAATTAATTTGCATACAGTGTTTGAGATAGACCATTTGTCCCTCACTTTCCCTCGTATTTGGGATTGACCACTGTAGTCACTGCACTCTTATAGATGGGTTTCTCAAACTTTGCGAACTCTCTGCGGTCATGAATAATCATGAGCAGCTTCCAGATGAAAAGCAGGGCCAGACCAATCAAAACGATGCCTGCAACCAAACCCGCTACGATTGGGATAATGTCAGGACCAGTAGGGCATTCTGGAAACACATATCAAACCATTGGCCATGGATTAATCATTAGGAATATTGTTCATAAGGAAACACTAGTTAGTTAAATGCACCTGTTCAAGACAGGAACAGTCTGACAAATTCAATCACGCTTTTAAAATGATCCTTTTTGAGTTGAACTGAATTCAGCGTGTCCGCAAAGATTTTTCCAAACATGCCAGCACACTCTGCGCAGCATTTGGATGCAAGA

Function

symbol description
itgb1b Enables protein heterodimerization activity. Involved in cell adhesion mediated by integrin and endothelial cell-matrix adhesion via fibronectin. Acts upstream of or within several processes, including Kupffer's vesicle development; cell migration involved in gastrulation; and muscle cell development. Predicted to be located in several cellular components, including lamellipodium; melanosome; and ruffle membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Is expressed in several structures, including cardiovascular system; digestive system; mesoderm; muscle; and pleuroperitoneal region. Orthologous to human ITGB1 (integrin subunit beta 1).
itgb1 Enables several functions, including collagen binding activity involved in cell-matrix adhesion; enzyme binding activity; and fibronectin binding activity. Contributes to C-X3-C chemokine binding activity. Involved in several processes, including cell surface receptor signaling pathway; cell-cell adhesion mediated by integrin; and regulation of signal transduction. Acts upstream of or within calcium-independent cell-matrix adhesion and positive regulation of apoptotic process. Located in several cellular components, including filopodium; neuromuscular junction; and sarcolemma. Part of integrin complex. Colocalizes with focal adhesion; perinuclear region of cytoplasm; and ruffle membrane. Biomarker of lung non-small cell carcinoma and lung small cell carcinoma.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375867 True 2019 lncRNA 0.37 2 9212999 9219089

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 454971 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 498741 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 525068 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 660991 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 1032898 8155454 ~ 8180101 (-)
epc1b LOC108280341,LOC108442943 coding upstream 197100 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 432486 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 496856 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 655694 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 716134 9935223 ~ 9942312 (-)
LOC117600002 NA non-coding downstream 58756 9142741 ~ 9154243 (-)
LOC113543051 NA non-coding downstream 99995 9093194 ~ 9113004 (-)
G317328 NA non-coding downstream 104506 9108100 ~ 9108493 (-)
G317314 NA non-coding downstream 135765 9076464 ~ 9077234 (-)
LOC113543052 NA non-coding downstream 140127 9043352 ~ 9072872 (-)
G317369 NA non-coding upstream 8526 9227615 ~ 9227952 (-)
G317370 NA non-coding upstream 13583 9232672 ~ 9232896 (-)
LOC117599963 NA non-coding upstream 185295 9404384 ~ 9409943 (-)
G317422 NA non-coding upstream 192226 9411315 ~ 9415129 (-)
G317428 NA non-coding upstream 281576 9500665 ~ 9500867 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 239724 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 258889 8903824 ~ 8954110 (-)
G317176 NA other downstream 327290 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 724370 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1644865 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 1308193 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2400787 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 3689364 12908453 ~ 12928071 (-)
ccl25a NA other upstream 4393427 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 4446092 13665181 ~ 13680110 (-)

Expression


Co-expression Network