G317370


Basic Information

Item Value
gene id G317370
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9232672 ~ 9232896 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375870
TACGAACTCTAAACATGTTTATtagaacaaaacagaagaagaaaaaaagatatcatgagGTCAGCACAGAGCCTGCCGACATATATTCATATCACagattatgtattttattataaacaatcatatttgatatcatttttcataatattcatGCGAAAAACATCTCTTAACAGTAATGCACACCTCTGCATGAATGCGTTTGATAGTAAACCGCTTTCCTGAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375870 True 225 lncRNA 0.32 1 9232672 9232896

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 474644 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 518414 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 544741 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 680664 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 1052571 8155454 ~ 8180101 (-)
epc1b LOC108280341,LOC108442943 coding upstream 183293 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 418679 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 483049 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 641887 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 702327 9935223 ~ 9942312 (-)
G317369 NA non-coding downstream 4720 9227615 ~ 9227952 (-)
G317367 itgb1,itgb1b,LOC107659805,LOC108442929 non-coding downstream 13583 9212999 ~ 9219089 (-)
G317368 NA non-coding downstream 16609 9208874 ~ 9216063 (-)
LOC117600002 NA non-coding downstream 78429 9142741 ~ 9154243 (-)
LOC113543051 NA non-coding downstream 119668 9093194 ~ 9113004 (-)
LOC117599963 NA non-coding upstream 171488 9404384 ~ 9409943 (-)
G317422 NA non-coding upstream 178419 9411315 ~ 9415129 (-)
G317428 NA non-coding upstream 267769 9500665 ~ 9500867 (-)
G317470 NA non-coding upstream 406476 9639372 ~ 9642911 (-)
LOC117599950 NA non-coding upstream 425006 9657902 ~ 9659672 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 259397 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 278562 8903824 ~ 8954110 (-)
G317176 NA other downstream 346963 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 744043 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1664538 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 1294386 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2386980 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 3675557 12908453 ~ 12928071 (-)
ccl25a NA other upstream 4379620 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 4432285 13665181 ~ 13680110 (-)

Expression


Co-expression Network