G317390


Basic Information

Item Value
gene id G317390
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9412323 ~ 9415164 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375892
TGTGGGACAGGTGAGGGTGGGCCAAGACAATTAAAAAACCTTATGGACTGATAATGCCTCTGGAATGGGCATTCAGTTTGTGGTACATACATGAGTACAAGTAGCCTTGTGAAGTACCGTCCTCTTCACAGAAGAGAGCACTCGCAGTTTCCAAAGGAAAGCACCACAACATCTGGTGGCTGGGAGAATTCTTACAGGGGAAAATGTCCTTTGTtcatttctcttgtttttttaaacaaagtggAATGACAGAGATGTATACAAAGATCCTATTGCAGACCCCCCTTTTTCCTTACAGCCATAAAccataaaaaatcattttaaaaaaccacacaaaaaccATACAATCTTCAAAAGGACAGGGGAGGggcaattaaaaaataataaacagggtaaataaaaacagcactgagatatacacacacacacaggcccacagatatttggacattgaaaaagttattgttattttagttgTTTAGCAGAGAATATTGGAgatgaattaaataatgaatatgagttCAAAGTGCAGATTCTCAGCTTTAAtgtgagggtatttacatccacaTTGAGTGAACTATGTAAGAATTACAACACTTTATATGTGGTCACCCCTTTTAAAGGactaaaagtaattggacaatgcTGCTCAGCTGTGCCATGCCCAGGTGTgcgttattccctcattatttcacttccATTCAAACTGATAGGTTTAGAGGTCTAcagttgatttcaagtgtggcatttgcatttgaaatCTCTTTCTGTTAACTCTCAAAATAAAGTCTACAGAGCTGTAACTGCTAGTGatgcaagccatcattaggctgaaaaaagtATAAACAAGCATTagagacagcaaaaacattaggtgtggccaaatcaattatttggtatattcttaaaaagaacaaacacaCTGGTGAGTTCaagaacaccaaaaggccctgaagaccacagaaaacaactgtggttgATGATAGAAGGATTTTTTCcctgaggaagaaaaagaaaatcacaacgGCTGGCCAGATCAAAAACACCATCCTGGAGGTAGgcatatctgtgtcaaagtcaacaatcaagagaagctTTCACCAGAGTAAACAGAGGGTTTGTGGTAAGCGTAAAAAAacaccagatttaaaaaaaaaaaaaaccacaaaaacttgttccagaatgatgggaagagaagagtatggacaaaggaaggaactgctcatgacccaaagcacacctCAACTTATGGTATGGGCATGTGCGACTGCaaatggaactggttcccttgtatttattgattacGTGACTGTAGACAGTCACATGACACAAAGTAGCAGGATGATTTCTGAAGTGTATTGGGCTacattatctgctcagattctaACAAATGCTTCAAAAACCATTGGATGGTGCTTCACAGCACAGATGCACAATGACTCGAAGCATACTTCACAAGCAACCTTTGACTTTTTTAAGGCAAGTAATTGGAATGTTCTGCACTGGCAAGTCAAAAACCTGAATAGAAACCAAATGAGCATGGATTTCACTTGCTGAAACTAAAATGTCCCAAGAAcgagcaggaactgaagacagctgcagtaaaacCCCAGCAAAGcgtcaccagggaagaaacccaacatctggtgatgtctatggttTGCAGAATTTAGACAGTCATTGAgtacaaaggatttgcaaccaatataaaaaaaaatgtaaatttaatttatgatcaTCTTAGTTCATCCAGTTACTTTTGGTCCTTTAAATATTAGAGCTGAAAGGCTGCACTTTGAAAGTTGattatatcagtgtgtgtgtgtgtgtggccaaaattatgtggacaccccTCAGTTCAGGCACTTCAGCCCCACACATTGCTTACAGGTGCACAAAGTCAAGCACATTAGCCATGCAATCTCCACAAACATTGGCAGCAGAATGGGTCATACTAAGGATGCCACCTTTGCCATAagtcagtttgtgaaatttctgccctggtcaactgtaagtgctattattgtgaaacTGAAGAGtctaggagcaacaacagctcagccaTATAACGGTAGTTTACGCAAACTTGCAGAGTGGGGCCGTCGACTGCTGAAGTGCAGAACACTTAAAAATGACCTATCTGAGCAGCTGCACACATGCCTAAGATCACTATGTGCATTACCAAGCATCAGCtagagtggtgtaaagcacacaGCCACTtgactctggagcagtggatacattctctggagtgatgaatcagaCCTCACACACTGGCAGACTGATGGATGAATTTGGGTTTACACTTACACAGTGCCAGCAGTGAAGGAGGGATAATggtttggggctgtttttcagggtttactcagatgttaatgctacagcatataactGTCTAAAATTTCTTTGCATGTTTCCAACATAAGTTTGGGGAAGGCACTGGCCTGTTCCTGCAAGACtttgcccctgtgcacaaattgaggtccataaagacatggtttgataAGTTTGGTGCGGCGAAACTCCAGTGGTCTGCATagaccctgacctcaaccacactgaaaCCTTTGGGATTAACTGGAACATCGACTGCAAGCCAGGCCTtcttgtccaacatcagtgtctaaCCTCACAAAAGCTCTTTTGATGGTCAGATGTCAAATTTTTGgcttcacagtgtgtgtgcacacgtgtatatatatgtgtatatatatgtgtaaatattacatatacatatacaaatatacatatacacacacaaacacacacacaatatgtggCCAacacacctgtatacctgctcattcatgcagttatccaatcagccagtcatgtggcagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375892 True 2842 TUCP 0.40 1 9412323 9415164

Neighbor

gene id symbol gene type direction distance location
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding upstream 193222 9168411 ~ 9219101 (+)
LOC113543049 LOC108280422 coding upstream 249129 9033569 ~ 9163194 (+)
LOC113543050 LOC108280424 coding upstream 385065 9009201 ~ 9027258 (+)
urb1 urb1 coding upstream 520365 8815766 ~ 8891958 (+)
cavin4a murc,murca,LOC107690354,LOC107749140,LOC107602614,LOC107721748 coding upstream 609413 8800697 ~ 8802910 (+)
LOC113533645 arhgap12,LOC108280343 coding downstream 117513 9532677 ~ 9642644 (+)
LOC113533145 NA coding downstream 373833 9788997 ~ 9827888 (+)
fndc7a LOC108280340 coding downstream 414214 9829378 ~ 9861148 (+)
dnaaf6 pih1d3 coding downstream 528589 9943753 ~ 9952320 (+)
LOC113533165 LOC108280405,LOC100705068 coding downstream 566022 9981186 ~ 9989044 (+)
G317257 NA non-coding upstream 316775 9086844 ~ 9095548 (+)
G317200 NA non-coding upstream 438968 8970161 ~ 8973355 (+)
G317166 NA non-coding upstream 453672 8958437 ~ 8958651 (+)
G317139 NA non-coding upstream 469988 8938718 ~ 8942335 (+)
G317148 NA non-coding upstream 508254 8903190 ~ 8904069 (+)
G317395 NA non-coding downstream 29545 9444709 ~ 9465969 (+)
G317400 NA non-coding downstream 85493 9500657 ~ 9500860 (+)
G317401 NA non-coding downstream 86128 9501292 ~ 9501840 (+)
G317491 NA non-coding downstream 290249 9705413 ~ 9705681 (+)
LOC117599959 NA non-coding downstream 290756 9705920 ~ 9711900 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 598913 8811595 ~ 8813410 (+)
G316745 NA other upstream 1143125 8268709 ~ 8269198 (+)
G316744 NA other upstream 1148262 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 1655362 7751694 ~ 7756961 (+)
G316413 NA other upstream 1716404 7695534 ~ 7695919 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 543829 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 1121267 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 1148657 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 1315182 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1984720 11399884 ~ 11464769 (+)

Expression


Co-expression Network