LOC117599963


Basic Information

Item Value
gene id LOC117599963
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9404384 ~ 9409943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU375939
GaccactcacacactgtaaagTATACGCTCAGCTCTGTTCTTTACCAACTAGCGTaccaacactgaaaaaaatgattcattggCTCAACAACCCCTACGTATAAAGATAAAtagattaaactaaaaaaataacatttcataacattttttGCTCTATTTAGCATACATTAGTGCGtgcaacataaaaatataaattacaagGTGGACTTAAATGTATGCATAAAgtgaatgagaaaatgtaagTCATGTCAACTACCATTGcaattttgttaaaattaagTAAACCTAACATAAAATTTGCCTGTGAGAGACATGATATGCAAATATTCTCCTGCCAACGAACAAGAGCCATTTTCTAAAGCGCAACGTGAAGACGGTGAAAACTTTGACAGTTTTTTAAGGTCAAAGAAGAATTCAGAAGATTAACAGCTGTTGAGCTAGAAACAACATTCATGGCAAACCTGGACAAATACACAGATGCACTCCCGTCTTTGTTTCGCACCAAGGGAGGAAATGCTGGACAGCAAATTTGTGAAATTTTGAATGTGCTGTACCAGGTATCTTCTCTgctgatgctctgccaggcctgtGCTGCAGCCAACTTCAGCCAACTGCTTATTTTGGGGGTCAGGTCCCCTTAAAGTGATACTCcaacctaaaaataaaatatctctcATTGTTTACTCACTCACATGCTGTCCCAGATGTATATGACTTAGTTTCTTCAGATGAACacacatttttagaaaaatattcCATCTCTGTGAGTCCATATAATGCAATTCTAGGGGACCCTTAAAGTAGACGctttaaaaaccacacaaagcGAATGCAACAGTAATCCATACATCTCAGCGGACGAACTGTCATCTTCTGAATTGAAATGatagatgtgtgtgaaaatgctaATATTTCAAACTATAAACCAATGCTTCTGGCCAACTGTTATACGTGCATTTATGAGTTCACCCTTGGCGTAAACATCAGCACGCTGTGAAACGTAACATAAGTGCGTTGTAAAACTCACACAAGAAGTGACAGTTCTCAGTGGTTCTACATCACTTCTCGTGTGAGCTTCAGAACACGCTTGTGTCACACTTCACAATGTGTGCTGTTCAGTTTATGATGCTATGAACCCAGTTGGTTAGTTTAAAATATTAGTACTTTTCTTAAATATGCATATCATTGATTCATCAACTGGGGTCGTATGGATTACCGTCGTTTAGAAATtactgatttgttttatttaatgagaAAAGTTGAGATCCAAACctaaataatcaacttaacaATGGCAATCTACCAATTTCACCCAGTTTGAAACAATAgactgtaacatttattttatttattaaagttatgtttgttgtgttactTCAAAACATTGtctcattttgttatttattttatttaatgcactattttttgcatttatttaatcatatttttgagaaatattaatcttttatgAAGAGTTGCAAAGgttgaaaaaaatcaaggaaGTGACTTGTTGTGAACTTCCTTTTGTCaactttgtcacttttttttccagcagtaTTTATAGTCATGATTTTTGATTTTCAGGCTGCTTTATTTTCCATAGTATTGCAAACTCTgtcgagaaaaaaaatacttccgTTTTATAAGCTTCTGAAAAACTTTTAGTGAAtgaagtggtttttttttttattaagctgTGCTCAATTCATTTGTATACAAAAGTATAAGCTCTGtctaaaaataaagtaaaatgttttattttgtgctaattttatgttttgtgtttattttaagacACTGAATGTTCTGGACCAGTAGGAAGACCAGTTTTATTCAATAGCTCTAgat
>XR_004580308.1
TCAATCTTGCGAATGTCATGTCTATGCCAAAATCAACCACACGCCACGTTCAATGTCAAGTTCACAGTCAGAAGATTACTGATCatacacacctggactcaatcaccacCTCACCTATTTAAGCACACTCCGaccactcacacactgtaaagTATACGCTCAGCTCTGTTCTTTACCAACTAGCGTaccaacactgaaaaaaatgattcattggCTCAACAACCCCTACGTATAAAGATAAAtagattaaactaaaaaaataacatttcataacattttttGCTCTATTTAGCATACATTAGTGCGtgcaacataaaaatataaattacaagGTGGACTTAAATGTATGCATAAAgtgaatgagaaaatgtaagTCATGTCAACTACCATTGcaattttgttaaaattaagTAAACCTAACATAAAATTTGCCTGTGAGAGACATGATATGCAAATATTCTCCTGCCAACGAACAAGAGCCATTTTCTAAAGCGCAACGTGAAGACGGTGAAAACTTTGACAGTTTTTTAAGGTCAAAGAAGAATTCAGAAGATTAACAGCTGTTGAGCTAGAAACAACATTCATGGCAAACCTGGACAAATACACAGATGCACTCCCGTCTTTGTTTCGCACCAAGGGAGGAAATGCTGGACAGCAAATTTGTGAAATTTTGAATGTGCTGTACCAGGTATCTTCTCTgctgatgctctgccaggcctgtGCTGCAGCCAACTTCAGCCAACTGCTTATTTTGGGGGTCAGGTCCCCTTAAAGTGATACTCcaacctaaaaataaaatatctctcATTGTTTACTCACTCACATGCTGTCCCAGATGTATATGACTTAGTTTCTTCAGATGAACacacatttttagaaaaatattcCATCTCTGTGAGTCCATATAATGCAATTCTAGGGGACCCTTAAAGTAGACGctttaaaaaccacacaaagcGAATGCAACAGTAATCCATACATCTCAGCGGACGAACTGTCATCTTCTGAATTGAAATGatagatgtgtgtgaaaatgctaATATTTCAAACTATAAACCAATGCTTCTGGCCAACTGTTATACGTGCATTTATGAGTTCACCCTTGGCGTAAACATCAGCACGCTGTGAAACGTAACATAAGTGCGTTGTAAAACTCACACAAGAAGTGACAGTTCTCAGTGGTTCTACATCACTTCTCGTGTGAGCTTCAGAACACGCTTGTGTCACACTTCACAATGTGTGCTGTTCAGTTTATGATGCTATGAACCCAGTTGGTTAGTTTAAAATATTAGTACTTTTCTTAAATATGCATATCATTGATTCATCAACTGGGGTCGTATGGATTACCGTCGTTTAGAAATtactgatttgttttatttaatgagaAAAGTTGAGATCCAAACctaaataatcaacttaacaATGGCAATCTACCAATTTCACCCAGTTTGAAACAATAgactgtaacatttattttatttattaaagttatgtttgttgtgttactTCAAAACATTGtctcattttgttatttattttatttaatgcactattttttgcatttatttaatcatatttttgagaaatattaatcttttatgAAGAGTTGCAAAGgttgaaaaaaatcaaggaaGTGACTTGTTGTGAACTTCCTTTTGTCaactttgtcacttttttttccagcagtaTTTATAGTCATGATTTTTGATTTTCAGGCTGCTTTATTTTCCATAGTATTGCAAACTCTgtcgagaaaaaaaatacttccgTTTTATAAGCTTCTGAAAAACTTTTAGTGAAtgaagtggtttttttttttattaagctgTGCTCAATTCATTTGTATACAAAAGTATAAGCTCTGtctaaaaataaagtaaaatgttttattttgtgctaattttatgttttgtgtttattttaagacACTGAATGTTCTGGACCAGTAGGAAGACCAGTTTTATTCAATAGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU375939 False 1848 lncRNA 0.34 3 9404384 9409812
XR_004580308.1 True 1973 lncRNA 0.35 3 9404390 9409943

Neighbor

gene id symbol gene type direction distance location
ift57 ift57,LOC108280285 coding downstream 646356 8726321 ~ 8758028 (-)
tmem71 tmem71 coding downstream 690126 8690052 ~ 8714258 (-)
si:dkey-7l6.3 LOC108280163 coding downstream 716453 8678819 ~ 8687931 (-)
LOC113543001 LOC108280205,LOC108428270,LOC107749125,LOC107659567,LOC107602634 coding downstream 852376 8505221 ~ 8552008 (-)
basp1 LOC108280584 coding downstream 1224283 8155454 ~ 8180101 (-)
epc1b LOC108280341,LOC108442943 coding upstream 6246 9416189 ~ 9486194 (-)
zeb1a LOC108280338 coding upstream 241632 9651575 ~ 9685427 (-)
LOC113533399 LOC108280347 coding upstream 306002 9715945 ~ 9788653 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding upstream 464840 9874783 ~ 9894767 (-)
LOC117599941 LOC107739197,LOC107573659 coding upstream 525280 9935223 ~ 9942312 (-)
G317370 NA non-coding downstream 171488 9232672 ~ 9232896 (-)
G317369 NA non-coding downstream 176432 9227615 ~ 9227952 (-)
G317367 itgb1,itgb1b,LOC107659805,LOC108442929 non-coding downstream 185295 9212999 ~ 9219089 (-)
G317368 NA non-coding downstream 188321 9208874 ~ 9216063 (-)
LOC117600002 NA non-coding downstream 250141 9142741 ~ 9154243 (-)
G317422 NA non-coding upstream 1372 9411315 ~ 9415129 (-)
G317428 NA non-coding upstream 90722 9500665 ~ 9500867 (-)
G317470 NA non-coding upstream 229429 9639372 ~ 9642911 (-)
LOC117599950 NA non-coding upstream 247959 9657902 ~ 9659672 (-)
LOC117599991 NA non-coding upstream 286813 9696756 ~ 9699099 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 431109 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 450274 8903824 ~ 8954110 (-)
G317176 NA other downstream 518675 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 915755 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 1836250 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 1117339 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 2209933 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 3498510 12908453 ~ 12928071 (-)
ccl25a NA other upstream 4202573 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 4255238 13665181 ~ 13680110 (-)

Expression


Co-expression Network