G317521


Basic Information

Item Value
gene id G317521
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9808847 ~ 9809171 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376052
GCGCGCATTAAAGTCCCGAATGAGCCCAGGGTCCAGGATGTCCCGGGCCGGGACCCAGGAGTGTTCCTCCGGGCCATAGCCTTCCCAGTCCACGAGATACTGCCGGGAGCCCCGTACTAGCCGGACATAGCGCGTATTCCACCCACATGATGAAGGTGGACCAGGAGGACGGGTTGTTGGCAGCCATACACCTCAGGGTGGTCTCGAGATCCTGGTTGATTCTCTCAGTCTGACCGTTGGACTCGGGATGGAACCCGGATGATAGGCTCACAGAGGCCCCCAGCGACTCACAGAAGGCCCGCCAGAATCGCGAGGAGAATTGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376052 True 325 lncRNA 0.61 1 9808847 9809171

Neighbor

gene id symbol gene type direction distance location
LOC113533645 arhgap12,LOC108280343 coding upstream 166203 9532677 ~ 9642644 (+)
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding upstream 589746 9168411 ~ 9219101 (+)
LOC113543049 LOC108280422 coding upstream 645653 9033569 ~ 9163194 (+)
LOC113543050 LOC108280424 coding upstream 781589 9009201 ~ 9027258 (+)
urb1 urb1 coding upstream 916889 8815766 ~ 8891958 (+)
fndc7a LOC108280340 coding downstream 20207 9829378 ~ 9861148 (+)
dnaaf6 pih1d3 coding downstream 134582 9943753 ~ 9952320 (+)
LOC113533165 LOC108280405,LOC100705068 coding downstream 172015 9981186 ~ 9989044 (+)
lig1 lig1 coding downstream 194485 10003656 ~ 10034015 (+)
mpz mpz,LOC106600490 coding downstream 233717 10042888 ~ 10053540 (+)
LOC117599959 NA non-coding upstream 96947 9705920 ~ 9711900 (+)
G317491 NA non-coding upstream 103166 9705413 ~ 9705681 (+)
G317401 NA non-coding upstream 307007 9501292 ~ 9501840 (+)
G317400 NA non-coding upstream 307987 9500657 ~ 9500860 (+)
G317395 NA non-coding upstream 342878 9444709 ~ 9465969 (+)
G317523 NA non-coding downstream 1629 9810800 ~ 9811007 (+)
G317526 NA non-coding downstream 6106 9815277 ~ 9815657 (+)
G317529 NA non-coding downstream 10095 9819266 ~ 9819465 (+)
G317618 NA non-coding downstream 65825 9874996 ~ 9875820 (+)
G317621 NA non-coding downstream 69744 9878915 ~ 9879756 (+)
G317390 NA other upstream 393683 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 995437 8811595 ~ 8813410 (+)
G316745 NA other upstream 1539649 8268709 ~ 8269198 (+)
G316744 NA other upstream 1544786 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 2051886 7751694 ~ 7756961 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 149822 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 727260 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 754650 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 921175 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1590713 11399884 ~ 11464769 (+)

Expression


Co-expression Network