G317618


Basic Information

Item Value
gene id G317618
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9874996 ~ 9875820 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376155
CTTAAAGTGTAATGGAACAAAAAAGGTTGCATGAGATCTACACCAAGTAACTTAGTAGAACAAAGGTCGGGGTGCATGAGAAGGTCCCAAGACAAGACAGAAAAGACAAGTGTGAGGAAAGTAAGCTCAGGGAGTCCCTTCAATGTCCATTCTGACATGTTCTTTCCCGTTGCTTGCATCTCTGCGGTGACTGCGTTCTCGACTGTGACTGTGTTTGTGCATATGCTCCTTGTTGTTGCTGCACTCACGCTTCTTGCTCTTCTCCTCTGGTTCCTGACGACTCGTGGAGCGTGACCGAGAACACTTCCTGCTTGAGCGCTCAGCTTTGTGCCTCCTCTCTCTACTCCGGCTTTGGCTTGATCGCTTGCTCTTACGCCGTTCATCTCCTTCTCCTTTGGCCCTCTTATCTTTTGAGCGCTCCCTTTCTCGCTCTCCGCCACTGGTGCGTTCTTTGTGCTCTCGCTCCTTCCGACGGCTTcgctctctttcgctctctccaTCCcgctctttctctcgctcttttcTCTCATTCCTCTGTTCGCGGCTCCTTCGCCAGTCTGAGGCTTGATCTGGGGTACGGGAATGCCGTCGATCCCTCTCTCgatctctgtccctgtctgcaaccctgtctctctccactctGTCCCTttccctgtctctgtccctgtccctgtcttTGCGTTGGcgatccctctctctctcgagcTCGCGGTCGAAGCTGGCGCCACGCCGTTCTCGGTGGTGACTGCGGCTGCGTGAGCGGTGTGGGGATCTCCGAGGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376155 True 783 lncRNA 0.55 2 9874996 9875820

Neighbor

gene id symbol gene type direction distance location
fndc7a LOC108280340 coding upstream 13848 9829378 ~ 9861148 (+)
LOC113533145 NA coding upstream 47108 9788997 ~ 9827888 (+)
LOC113533645 arhgap12,LOC108280343 coding upstream 232352 9532677 ~ 9642644 (+)
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding upstream 655895 9168411 ~ 9219101 (+)
LOC113543049 LOC108280422 coding upstream 711802 9033569 ~ 9163194 (+)
dnaaf6 pih1d3 coding downstream 67933 9943753 ~ 9952320 (+)
LOC113533165 LOC108280405,LOC100705068 coding downstream 105366 9981186 ~ 9989044 (+)
lig1 lig1 coding downstream 127836 10003656 ~ 10034015 (+)
mpz mpz,LOC106600490 coding downstream 167068 10042888 ~ 10053540 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding downstream 185406 10061226 ~ 10130722 (+)
G317529 NA non-coding upstream 55531 9819266 ~ 9819465 (+)
G317526 NA non-coding upstream 59339 9815277 ~ 9815657 (+)
G317523 NA non-coding upstream 63989 9810800 ~ 9811007 (+)
G317521 NA non-coding upstream 65825 9808847 ~ 9809171 (+)
LOC117599959 NA non-coding upstream 163096 9705920 ~ 9711900 (+)
G317621 NA non-coding downstream 3095 9878915 ~ 9879756 (+)
G317633 NA non-coding downstream 64149 9939969 ~ 9940237 (+)
G317703 NA non-coding downstream 229946 10105766 ~ 10106921 (+)
G317754 NA non-coding downstream 281457 10157277 ~ 10157530 (+)
G317761 NA non-coding downstream 310486 10186306 ~ 10187126 (+)
G317390 NA other upstream 459832 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1061586 8811595 ~ 8813410 (+)
G316745 NA other upstream 1605798 8268709 ~ 8269198 (+)
G316744 NA other upstream 1610935 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 2118035 7751694 ~ 7756961 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 83173 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 660611 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 688001 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 854526 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1524064 11399884 ~ 11464769 (+)

Expression


Co-expression Network