G317621


Basic Information

Item Value
gene id G317621
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 9878915 ~ 9879756 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376158
agaaaaacagccccaaagcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcAACTCAGCAttctttctcctccaaacacgACAAGTTGAGTTTTTACcaaaaaagttctattttggtttcatctgaccataTGACATTCTCCCAATCCTCTTCTGGATCATCCAAATGCTCTCTAGCAAACTTCAGATGGGCCTGGACATGTACTGGCTTAAGCAGGGGGACACGTCTGGCACTGCAGGATTTGAGTCCCTGGCGGTGTAGTGTGTTACTGATGGTAGCCTTTGTTACTTTGGTCCCAGCTCTCTGCAGGTCATTCACTAGGTCCCCCACTAGGTCCTCCCGTGTGGTTCTGGGATTTTTGCTCACCGTTCTTGTGATCATTTTGACCCCACGGGGTGAGATCTTGCGGGGAGATTATCAGTGGTCTTGTATGTCTTCCATTTTCTAATAATTGCTCCCACAGTTGATTTCTTCACACCAAGCTGCTTACCTATTGCAGATTCAGTCTTCCCAGCCTGGTGTAGGTCTACAATTTTGTTTCTGGTGTCctttgacagctctttggtcttggcCATAGTGGAGTTTGGAGAGTGACTGAGGTTGTGGCCAGGTGTCTTTTATACTGATAACAAGTTCAAACAGGTGCCATTAAAACAGGTAACGAGTGGAGGACAGAGGAGCCTCTTAAAGAAGTTACAGGTCTGTGAGAGCCAGAAATCTTGCTTGTTTGTAGgtgaccaaatacttattttaccGAGGAATTTaccaattaattcattaaaaatcctACAATGTGATTTCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC109045852, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376158 True 821 lncRNA 0.45 2 9878915 9879756

Neighbor

gene id symbol gene type direction distance location
fndc7a LOC108280340 coding upstream 17767 9829378 ~ 9861148 (+)
LOC113533145 NA coding upstream 51027 9788997 ~ 9827888 (+)
LOC113533645 arhgap12,LOC108280343 coding upstream 236271 9532677 ~ 9642644 (+)
LOC113543105 itgb1,LOC107659805,LOC107749113,LOC107690578,LOC107563813 coding upstream 659814 9168411 ~ 9219101 (+)
LOC113543049 LOC108280422 coding upstream 715721 9033569 ~ 9163194 (+)
dnaaf6 pih1d3 coding downstream 63997 9943753 ~ 9952320 (+)
LOC113533165 LOC108280405,LOC100705068 coding downstream 101430 9981186 ~ 9989044 (+)
lig1 lig1 coding downstream 123900 10003656 ~ 10034015 (+)
mpz mpz,LOC106600490 coding downstream 163132 10042888 ~ 10053540 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding downstream 181470 10061226 ~ 10130722 (+)
G317618 NA non-coding upstream 3095 9874996 ~ 9875820 (+)
G317529 NA non-coding upstream 59450 9819266 ~ 9819465 (+)
G317526 NA non-coding upstream 63258 9815277 ~ 9815657 (+)
G317523 NA non-coding upstream 67908 9810800 ~ 9811007 (+)
G317521 NA non-coding upstream 69744 9808847 ~ 9809171 (+)
G317633 NA non-coding downstream 60213 9939969 ~ 9940237 (+)
G317703 NA non-coding downstream 226010 10105766 ~ 10106921 (+)
G317754 NA non-coding downstream 277521 10157277 ~ 10157530 (+)
G317761 NA non-coding downstream 306550 10186306 ~ 10187126 (+)
G317939 NA non-coding downstream 624407 10504163 ~ 10510193 (+)
G317390 NA other upstream 463751 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1065505 8811595 ~ 8813410 (+)
G316745 NA other upstream 1609717 8268709 ~ 8269198 (+)
G316744 NA other upstream 1614854 8263339 ~ 8264061 (+)
fitm1 fitm1,LOC107688462,LOC107585187,LOC107722554,LOC107589905 other upstream 2121954 7751694 ~ 7756961 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other downstream 79237 9958993 ~ 9977916 (+)
capn10 capn10 other downstream 656675 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 684065 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 850590 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1520128 11399884 ~ 11464769 (+)

Expression


Co-expression Network