G317703


Basic Information

Item Value
gene id G317703
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10105766 ~ 10106921 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376260
ttaatttccatttctaaaacaaatactgggacaagtctaaaaatgctaataagtcagcagttaaaagagagtgcttacacactttaatgggctgttggacttggctaattgaaaggaaacatggctccaatgagagagttttcagttgaaacaatggaaaggattataaaactccttcaacaaggaatttcaacatggagtgtggccaaggaggttggttgctcccagtcagctgtgtctaaaatttgttgcaagtataaacttaatgggaaggttatgaaaggtagatatacaggcagactaaggaagatgtcaaagcatcaggatagaaactttgccttgaaaatagaaaatgcacaacaaaacaaatgaaaaacaaatgggcggaaacaagagtcaatgtttgtgacagaactgtaagaaaccggctgaatgaaatgagatttatatatagaaaagccaaaagaaaaccatcactaacaccaaaacagaagaaaacaaggttacagtgggctaaggagaagcaatcatggagtgtggatgattggatgaaagtgaaattcagtgatgaatcatgaatctgcattggccaaggagaagatgctggaacttttgtctggtgaaattttggacattttctcattccatccatagaaaataggtttggtgatgaaataatttttcaggatgacaatgcatcttgccacagagcaaacagttttaaagctttttttcaggaaaggcatatcaactcaatgacatggccagcaaacattccggatctcaatccaattgaaaatttatggtggaaagtaaaaaaactggtccatgttaaggctccaccctgcaaagctgatctgtcaactgctattcgagaaagttggaaccagattgacagggaatattgtttttcattagtgagatctatgcctcaaagaataaaagccagaggaggagcaacaaagtattaattgtgtttttttttgttgatgattccataattttttcctcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376260 True 1014 lncRNA 0.37 2 10105766 10106921

Neighbor

gene id symbol gene type direction distance location
mpz mpz,LOC106600490 coding upstream 52226 10042888 ~ 10053540 (+)
lig1 lig1 coding upstream 71751 10003656 ~ 10034015 (+)
LOC113533165 LOC108280405,LOC100705068 coding upstream 116722 9981186 ~ 9989044 (+)
dnaaf6 pih1d3 coding upstream 153446 9943753 ~ 9952320 (+)
fndc7a LOC108280340 coding upstream 244618 9829378 ~ 9861148 (+)
sdhc sdhc coding downstream 66899 10173820 ~ 10186067 (+)
trnar-ucu_12 NA coding downstream 80830 10187751 ~ 10187824 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding downstream 89187 10196108 ~ 10288224 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding downstream 184909 10291830 ~ 10347388 (+)
ccl20a.4 NA coding downstream 426063 10532984 ~ 10534451 (+)
G317633 NA non-coding upstream 165529 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 226010 9878915 ~ 9879756 (+)
G317618 NA non-coding upstream 229946 9874996 ~ 9875820 (+)
G317529 NA non-coding upstream 286301 9819266 ~ 9819465 (+)
G317526 NA non-coding upstream 290109 9815277 ~ 9815657 (+)
G317754 NA non-coding downstream 50356 10157277 ~ 10157530 (+)
G317761 NA non-coding downstream 79385 10186306 ~ 10187126 (+)
G317939 NA non-coding downstream 397242 10504163 ~ 10510193 (+)
LOC117599937 NA non-coding downstream 410667 10517588 ~ 10520208 (+)
G317946 NA non-coding downstream 417565 10524486 ~ 10524774 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 127850 9958993 ~ 9977916 (+)
G317390 NA other upstream 690602 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1292356 8811595 ~ 8813410 (+)
G316745 NA other upstream 1836568 8268709 ~ 8269198 (+)
G316744 NA other upstream 1841705 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 429510 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 456900 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 623425 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1292963 11399884 ~ 11464769 (+)
G318439 NA other downstream 1360378 11467299 ~ 11469499 (+)

Expression


Co-expression Network