G317736


Basic Information

Item Value
gene id G317736
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10137222 ~ 10137460 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376308
ttcaaaagaaagactagagtcgataatcacaccaaggttttttactgctgcacatgatgaaacagaaaggccatccagagttatgtaatcagaaagcttacttctagctgcatgtggtcctagtacaagtaattctgtcttgtcagaattaagtaagagaaagttaataagcatccagtttctgatgtcttttacacattcctcaactttattaagctggtgtctgtcatctggctttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376308 True 239 lncRNA 0.37 1 10137222 10137460

Neighbor

gene id symbol gene type direction distance location
LOC117599941 LOC107739197,LOC107573659 coding downstream 194910 9935223 ~ 9942312 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding downstream 242455 9874783 ~ 9894767 (-)
LOC113533399 LOC108280347 coding downstream 348569 9715945 ~ 9788653 (-)
zeb1a LOC108280338 coding downstream 451795 9651575 ~ 9685427 (-)
epc1b LOC108280341,LOC108442943 coding downstream 651028 9416189 ~ 9486194 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding upstream 210381 10347841 ~ 10392507 (-)
camsap2b LOC108261060,LOC108428284 coding upstream 256423 10393883 ~ 10460626 (-)
LOC113533548 NA coding upstream 432725 10570185 ~ 10584166 (-)
chrng LOC108428254 coding upstream 447058 10584518 ~ 10596849 (-)
LOC113533461 prss56 coding upstream 464238 10601698 ~ 10607930 (-)
G317726 NA non-coding downstream 13893 10121991 ~ 10123329 (-)
LOC113533396 NA non-coding downstream 118695 10015463 ~ 10018527 (-)
G317685 NA non-coding downstream 127955 10007652 ~ 10009267 (-)
G317669 LOC100537796 non-coding downstream 147007 9986802 ~ 9990215 (-)
G317664 NA non-coding downstream 155960 9980997 ~ 9981262 (-)
G317741 NA non-coding upstream 4008 10141468 ~ 10141670 (-)
G317826 NA non-coding upstream 38231 10175691 ~ 10179304 (-)
G317827 NA non-coding upstream 44236 10181696 ~ 10186043 (-)
G317849 NA non-coding upstream 96552 10234012 ~ 10302808 (-)
G317897 NA non-coding upstream 180551 10318011 ~ 10327550 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 1163947 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 1183112 8903824 ~ 8954110 (-)
G317176 NA other downstream 1251513 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 1648593 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2569088 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 389822 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 1482416 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2770993 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3475056 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3527721 13665181 ~ 13680110 (-)

Expression


Co-expression Network