G317754


Basic Information

Item Value
gene id G317754
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10157277 ~ 10157530 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376326
AAAGAAAGCTGTTAATCCACATGCAGATGGAGTGTGGAAACCCCAAGTTCTCAAGTTTCTCCACCAGTTTGTAGGGAAGGATGGTATTGAATGCCGAGCTGTAATCCACAAAGAGCATCCCGACGTAGCTCCCCTGCTGCTCCAGGTGGGACAACGCAGCATGGAGGGCTGTGGCCACAGCGTCCTCTGTGGATCTGTTTCCCCTGTAGGCAAACTGGTGAGAATAAAAACTTGAGGGCAGGAGTGATGTGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376326 True 254 lncRNA 0.51 1 10157277 10157530

Neighbor

gene id symbol gene type direction distance location
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding upstream 26555 10061226 ~ 10130722 (+)
mpz mpz,LOC106600490 coding upstream 103737 10042888 ~ 10053540 (+)
lig1 lig1 coding upstream 123262 10003656 ~ 10034015 (+)
LOC113533165 LOC108280405,LOC100705068 coding upstream 168233 9981186 ~ 9989044 (+)
dnaaf6 pih1d3 coding upstream 204957 9943753 ~ 9952320 (+)
sdhc sdhc coding downstream 16290 10173820 ~ 10186067 (+)
trnar-ucu_12 NA coding downstream 30221 10187751 ~ 10187824 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding downstream 38578 10196108 ~ 10288224 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding downstream 134300 10291830 ~ 10347388 (+)
ccl20a.4 NA coding downstream 375454 10532984 ~ 10534451 (+)
G317703 NA non-coding upstream 50356 10105766 ~ 10106921 (+)
G317633 NA non-coding upstream 217040 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 277521 9878915 ~ 9879756 (+)
G317618 NA non-coding upstream 281457 9874996 ~ 9875820 (+)
G317529 NA non-coding upstream 337812 9819266 ~ 9819465 (+)
G317761 NA non-coding downstream 28776 10186306 ~ 10187126 (+)
G317939 NA non-coding downstream 346633 10504163 ~ 10510193 (+)
LOC117599937 NA non-coding downstream 360058 10517588 ~ 10520208 (+)
G317946 NA non-coding downstream 366956 10524486 ~ 10524774 (+)
G317963 NA non-coding downstream 417284 10574814 ~ 10575152 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 179361 9958993 ~ 9977916 (+)
G317390 NA other upstream 742113 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1343867 8811595 ~ 8813410 (+)
G316745 NA other upstream 1888079 8268709 ~ 8269198 (+)
G316744 NA other upstream 1893216 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 378901 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 406291 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 572816 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1242354 11399884 ~ 11464769 (+)
G318439 NA other downstream 1309769 11467299 ~ 11469499 (+)

Expression


Co-expression Network