G317761


Basic Information

Item Value
gene id G317761
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10186306 ~ 10187126 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376333
TAGACATTCACTCTGGGAGGGGAATGTGGTGACGGTGGTTAAACGTTCAAGTATATAAGTGTTATTTTCaagggcaaaaaaacaaacaaaaacagtgtagtgtgtagataCATCGCAAACCACTCGGTAGCTGATCATTGCTTGCCATGCCCACTTGGCATCAAACCTGGAACCACAGAGTGTTTTAGACCTGACAAAGCCAGCAAGAATTTAATCTCAAGAGTTAAAGCATTGCTGTGGCATGTAGCATCAATCCATTAATCACAGTAAGCCCCAGAATAACCTTTTTTATTATAGGATTATTCATCATGGGGAGTAATGTACTGTTGTTAAAGTGGtataacttttatatttttgtgattCAAAATATTGGATTACCCAATAATGGCTATTTAAGCAATAGAGTCATATCTATGAGGATTATCTACTTTAATTTAGGGCTTTACCATATTTTTAATCCAGTAAATTATCCTCTGTAATTAAGCATTGATGAACGCCACAATTAACATGTTTATGGCCAGTACCCAAGAAAGTATTTCAACTGATACATTATtaccaaaatgtaaaacattaaatatttgcaATTCCAGTTTATCATTAATGTCTCATTCTTTTTTGTAGTTGTTTCTTAATAATCCTTATTATTGTCTTAAAATTATAAGTATAAAGCCCGGATTCATACATTTTTTGCAGCCTATCTGTGAACACACATGCTGACcattaaatctaaatttaatgcagttgattttttttttttttctctctcttgctggtTTTCCCCGGTTTACTCAGGTCTCATCCTTATCTAGTCTAATGTGCAG

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0017144 drug metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0070469 respirasome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU376333 True 821 lncRNA 0.34 1 10186306 10187126

Neighbor

gene id symbol gene type direction distance location
sdhc sdhc coding upstream 239 10173820 ~ 10186067 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding upstream 55584 10061226 ~ 10130722 (+)
mpz mpz,LOC106600490 coding upstream 132766 10042888 ~ 10053540 (+)
lig1 lig1 coding upstream 152291 10003656 ~ 10034015 (+)
LOC113533165 LOC108280405,LOC100705068 coding upstream 197262 9981186 ~ 9989044 (+)
trnar-ucu_12 NA coding downstream 625 10187751 ~ 10187824 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding downstream 8982 10196108 ~ 10288224 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding downstream 104704 10291830 ~ 10347388 (+)
ccl20a.4 NA coding downstream 345858 10532984 ~ 10534451 (+)
vwa5b2 LOC108280745 coding downstream 468283 10655409 ~ 10704492 (+)
G317754 NA non-coding upstream 28776 10157277 ~ 10157530 (+)
G317703 NA non-coding upstream 79385 10105766 ~ 10106921 (+)
G317633 NA non-coding upstream 246069 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 306550 9878915 ~ 9879756 (+)
G317618 NA non-coding upstream 310486 9874996 ~ 9875820 (+)
G317939 NA non-coding downstream 317037 10504163 ~ 10510193 (+)
LOC117599937 NA non-coding downstream 330462 10517588 ~ 10520208 (+)
G317946 NA non-coding downstream 337360 10524486 ~ 10524774 (+)
G317963 NA non-coding downstream 387688 10574814 ~ 10575152 (+)
G317964 NA non-coding downstream 388187 10575313 ~ 10575547 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 208390 9958993 ~ 9977916 (+)
G317390 NA other upstream 771142 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1372896 8811595 ~ 8813410 (+)
G316745 NA other upstream 1917108 8268709 ~ 8269198 (+)
G316744 NA other upstream 1922245 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 349305 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 376695 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 543220 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 1212758 11399884 ~ 11464769 (+)
G318439 NA other downstream 1280173 11467299 ~ 11469499 (+)

Expression


Co-expression Network