G317918


Basic Information

Item Value
gene id G317918
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10344638 ~ 10347320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376510
aataatataaatttttgatttttgtacacatttaaaagatgaataaaattatgaaattcaCAAGTACAAGACCcaatataaacacaataatactAAATAGGCTTTTATAACAGGAGTAAGATAGATACAGTAATTGGGTGAGTGGGTGATATTCACGCTATGACACACATCCACAGAGAGTACTGcacattcattcactgatcATCCATTATACTTGTGGAGATGAGAGAGACTGACTGATAATGTGATATCTACTTTCATGTCTGTAGCATTAAATACAAAGTGGTATTTTGTACTGCTAAAGAGAGTGAATTTATTGTATCATTTCAATGCTAACCAGAAGTTCCTACTAAAAGGAATTTCAGTTGAATTattcacttcattcattcattccttcatcttcagtaaccactatATTCTGAGTGGGATCGTGGTGGGTCTGGCGCCAATCCCAGCAACACCAGGAACAAGGTGGGAAATAGCAGGGCTTTTTCACTTCTTGAAGCCAATTATTTGCTAAATTTGAAAGCCTTCACCCTGTTTAGCAAATCTGTCCTTCAATGACAATCGAATGGGaagacagtttttaaaattccacCTAAACAATGTGCATCAGGAAACACATCACTGATTAATATCTATATAATGTGTATGGATAAAACCTTGCCTAGTTATATTTTTGCATGTTTCATTTGCATCTTTCATTCAGACGGTACAAAATGGGCACAAATAATGGCATAAAGAAATATTAAGTCACCAATCTGGAGAGAAGAAGTAATGGCACACTGTAatgtagctacatttaatgttttaaataagcTAATAGTGGGTATTTATTCAATGTTCAAAATAAACatgggtaatttttttttttttcccagtggaCACCGTCTGGTAATGGAACTGTAAAAGTACAAATTACTCACATCAACAACGACTTGGAAACAAATGCCTTTCCACACATTTTCTGAACTGTTAgtctgtcttcttttttcttttgtataaaaatatataaaaatgctttcaaatgccatgttctaagttcaGATACAAATGTGGAAAAAGCGCTCTTCTACTTTGCAGGGGCAAATATGTGATGTAGGACAAGAGGACTGTACAAATAGAAAAGGTTCAATTGTTCCCTCTGGAACATCCCCACATTTATGAGTTTGTGtgctcactcacacatacacataaaaagTATCAAACAATTTAGGTTTTATGGAAGGGAGGCCTTCAcctcttctgctttttcttcttttttggtaCTTTTTGAGTACCAGGTATGAAAAAGCAtcttggacattttttttttcagtaacactttatatAAAGCCTGAATGTATAAAGCTTTATGACcgtacttattattatttgtaattttggTAAGGTAATGCTTTGTAATGACAAATATTTAAACTGAATTAATATGCCTATGTACATGGtctatagcagctttaaacttgtaatataaataatagaaataatgttTAGCTGATCTGCACTTGACAACTTATAATAGTCCTATTGTTTAATACttcttaataaatattaaaggtgCACAGCACAGTCATTCAGGGCAGTAATGCTATGAACCATGGCATTATTATGAACAgtgttgtttatattacaacatgtttaattcattaataaagtacTAGAATTCATTTCCTTAAAGCTTTATGAGGTATTATAAAGAGTTATACATTTTCTAATGCATTGGTaccaaaattacaaaaagtgcAGTCACAAAGGTTTATGAATACAGGCTTAGAAAAGTTTTATCTGCCTTTCCAGAACAAGGGAAGCTAAGCTGTTGCTCACACACGTGCAGTGTTTCCTCTAAGTTTATGTAATTCTGTGTTTTCAGGCCCAGACATTGAGTACTGCACAGTTGTAGCTTTTTACACAAATCCCTTCACAAAAAGGGCAGTGCAAATGCTGTTCTTAATGTATTCATATAGCTGGAATAAGATGGTCTTCATCTGCAATTTGGACCAAATCTATCACACTTGGGACTTGGAAACACCAAGAAATCCACCAGTAGGAGTTTctataaaatgcaatttttgcaATAGCTGCCAGTTATTGATGTACTGCTAAGACAAAATGACTATAAATTATATAGACTTCCATCACCATTTTATGGGCTGCCACCAACAGTGGAAAGAGTCACTCTTTTGCTGCAAGCAAAAATCTTACTGTCTGATTATTTCATATCTAATGACATTCTGCAACTCCTGCAGGTATGACACCAATGAGACTTTGCACTGAAGAgcatacactttacacacatacactgttcTTCATATTATCTAATGGCACAGACTGTGTTAACTGAGGCTGGAGAAATTTCCCAACAACCTCTGGTGCCATCTGCAGATTCCAACAGGAAACAGTCGGGTCACAACGTCCCCTTAAATGGACAAACCTATTGCTTCTTATCAGCTATCGTGCTTGTTATACCAGGGCAGTTATCAACTTCAGGAAACACTCCTTGTGTCTGTTGACACTTCTTTCGGGTATATTTACATATGATGACAGGAGAAGTGAAACAGGGGTAAGGGGAGAATGGAGAACGGAATATATAGAAGTTATGAATGTGTCCCTCCaccctttttatattttatctttgcATTTCATACTTAATCTTGGTTTGGCATTATAGTGATGGCACAAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376510 True 2683 lncRNA 0.35 1 10344638 10347320

Neighbor

gene id symbol gene type direction distance location
LOC117599941 LOC107739197,LOC107573659 coding downstream 402326 9935223 ~ 9942312 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding downstream 449871 9874783 ~ 9894767 (-)
LOC113533399 LOC108280347 coding downstream 555985 9715945 ~ 9788653 (-)
zeb1a LOC108280338 coding downstream 659211 9651575 ~ 9685427 (-)
epc1b LOC108280341,LOC108442943 coding downstream 858444 9416189 ~ 9486194 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding upstream 521 10347841 ~ 10392507 (-)
camsap2b LOC108261060,LOC108428284 coding upstream 46563 10393883 ~ 10460626 (-)
LOC113533548 NA coding upstream 222865 10570185 ~ 10584166 (-)
chrng LOC108428254 coding upstream 237198 10584518 ~ 10596849 (-)
LOC113533461 prss56 coding upstream 254378 10601698 ~ 10607930 (-)
G317897 NA non-coding downstream 17088 10318011 ~ 10327550 (-)
G317849 NA non-coding downstream 41830 10234012 ~ 10302808 (-)
G317827 NA non-coding downstream 158595 10181696 ~ 10186043 (-)
G317826 NA non-coding downstream 165334 10175691 ~ 10179304 (-)
G317741 NA non-coding downstream 202968 10141468 ~ 10141670 (-)
G317937 NA non-coding upstream 149400 10496720 ~ 10496953 (-)
G317941 NA non-coding upstream 171151 10518471 ~ 10520263 (-)
G317943 NA non-coding upstream 173293 10520613 ~ 10522428 (-)
G317953 NA non-coding upstream 178945 10526265 ~ 10526474 (-)
G317977 NA non-coding upstream 215047 10562367 ~ 10562528 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 1371363 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 1390528 8903824 ~ 8954110 (-)
G317176 NA other downstream 1458929 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 1856009 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2776504 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 179962 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 1272556 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2561133 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3265196 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3317861 13665181 ~ 13680110 (-)

Expression


Co-expression Network