G317939


Basic Information

Item Value
gene id G317939
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10504163 ~ 10510193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376532
agctgcgaGGACTTGGGTGGAAGTGGGCAGGTGTTGTAACTGGAGTTTGAAGAGCTCAGAGAAGAATGGCgataagcatttaaaaaaatcttcaagaATGGACTCTGCTTTTTCATTAGTAGTCACCAGTTTTATGGTTCAAGGGAAACGGAACTAATTACCCATCCAGGCTACAGGCTTCAATACAGATGCTAGAAAACAGTACTGAAGATGGGAGTTTCCTGCTACAGGACAGAACCTGTGACTTGGCACGTGAGGAGGTCAACACACTGTCAGAGCTAATGATTCACatcacagaggaaaaaaaggcacTACAGTACAAAGTTTTATTCCCATTATCCACTAAATAATCCCAGCAGTTGCAGTGTTGGATCCCGCTGGTAAAGGATGAGAAGTCAATGAgccattcatttctttctctcttctttttttttgtcccgtACCCCTCCCTGTGAGAGTAATGAATCTGAAATGTTGGTGAATTTAGGTTATTTTAAGACCAAGaggaaagacaaaagaaagactattttacttcattttgaTGCAAGCCATGACAAAATGTCTGCTAAATCACTACTAAATGTCTTTAGGCCAATATTGTGAAACTCaactttttcctgttttcttagTTGTTTTTAGATTATAGGGAAATACAAACATTCTTTACATAGATCATGAGAGAAATTTGATTAATTGTTTGTGATTGGCCCACAGCTGAACATGCGGCATAATCCTGTCACATGAGATTAATTCTAATAATTCACTGTGCTTGTTTTATTGCTTCCAGTTAACATACAGTACAACTGACTCATGGGCTACAGCCCAATAGTAAAGAGTCTGGAGAAatgtaccatttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376532 True 863 lncRNA 0.38 2 10504163 10510193

Neighbor

gene id symbol gene type direction distance location
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 156775 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 215939 10196108 ~ 10288224 (+)
trnar-ucu_12 NA coding upstream 316339 10187751 ~ 10187824 (+)
sdhc sdhc coding upstream 318096 10173820 ~ 10186067 (+)
atp1a2a atp1a2a,LOC108261056,LOC108428278,LOC107692876,LOC107749099,LOC107721700 coding upstream 373441 10061226 ~ 10130722 (+)
ccl20a.4 NA coding downstream 22791 10532984 ~ 10534451 (+)
vwa5b2 LOC108280745 coding downstream 145216 10655409 ~ 10704492 (+)
mul1a LOC108280869 coding downstream 201515 10711708 ~ 10719149 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding downstream 328562 10838755 ~ 10860296 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding downstream 351766 10861959 ~ 10878656 (+)
G317761 NA non-coding upstream 317037 10186306 ~ 10187126 (+)
G317754 NA non-coding upstream 346633 10157277 ~ 10157530 (+)
G317703 NA non-coding upstream 397242 10105766 ~ 10106921 (+)
G317633 NA non-coding upstream 563926 9939969 ~ 9940237 (+)
G317621 NA non-coding upstream 624407 9878915 ~ 9879756 (+)
LOC117599937 NA non-coding downstream 7395 10517588 ~ 10520208 (+)
G317946 NA non-coding downstream 14293 10524486 ~ 10524774 (+)
G317963 NA non-coding downstream 64621 10574814 ~ 10575152 (+)
G317964 NA non-coding downstream 65120 10575313 ~ 10575547 (+)
G317967 NA non-coding downstream 71900 10582093 ~ 10582292 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 526247 9958993 ~ 9977916 (+)
G317390 NA other upstream 1088999 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1690753 8811595 ~ 8813410 (+)
G316745 NA other upstream 2234965 8268709 ~ 8269198 (+)
G316744 NA other upstream 2240102 8263339 ~ 8264061 (+)
capn10 capn10 other downstream 26238 10536431 ~ 10562994 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other downstream 53628 10563821 ~ 10568907 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 220153 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 889691 11399884 ~ 11464769 (+)
G318439 NA other downstream 957106 11467299 ~ 11469499 (+)

Expression


Co-expression Network