G317941


Basic Information

Item Value
gene id G317941
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10518471 ~ 10520263 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376534
ctaatattgtgtaggtccctcttttgccgccaaaacagctctgatccgtcgaggtatggactccacaagacctctgtaGGTGTGCTGTAgtgtctggcaccaagatgttagcacaagatcctttaagtcctgtaggttgtgaggtggggcctccacgGATCGGACTTCTTTGTTCAGGATATTCCAAAGATGCTTgtcttatatataaaacatttgttttgcagTCTAATTATTAATTTGAGGCCGTGTTCATTTTCAACCCATCGAGTTTTTATACAAACTATTCATGATTTGACCAAAGTAGagtgaaataatattttctgataGACTTGGAAAGTTAGACATATGACCATAAATGTGTGATACGGCCAGAAAACCGAATAAGGTCAGAAAACTCAATACAAGGCGGATGGTTCAAGCAGGGACATCACGATTCCACTGTTTCTCACATTCTCACAAATGAATGATGATATCACTCACATTAAAACACAACTTATGTCATGAGGCCAGCAGGGTAGTGTACTGCAAGTTTCCATACCGTAGAGAAAGTTGTACTGTTCTTCCTGCTCCGCCATTTCagtcaaatgtgtttttagtgtgCTTCATAACACATTTCAACTAAATGATAATGAAATTCGTTGCCAACTATTTCTATCATTGATTTTTATCGATTTTGTCGATTAGTTGTTGCAGTTCTACATTGCTCAGCTTGTTGTACTTCAAAAGCAAAAGTTAAGTGGCTCTAGGATTAGAGGTGTCTAACGTAGATTTCAGTGATCTAGCAAATATTTTCAAAAGGTGTTCAAGTTActacaaaatattcaaataaataattagacaATGCAAATTTTTTGCAGACAGTATCTCACTtacaaaatgtttatgtagacaCAAACATTACAGAATCATTCACACATAGCAGAAATTTAGTGTAGCCATTCCACCTACCGGCATAGTTTCAGAGGTGGAAAGAAATCCATACAGACACGGGGTGAAGACAAGAGTCTTGTGTAATAAACTATATAACAATGTTATGACCTTTTTCCATCAATATTCAACAGCCAGAggataacagaaataaataaatgctctcATTTTTACTAGGGTGTTAGCACAGCTCTTAGCACAGTTtccattaatacattaaaatcaGCACGCTTTGGCCAATGTGCCCATCAGACAGGCATGTGATTTACTTCTGGATTTGCATTTCCCTTAGATTTTCAGAGAGCAAATCAGCTAATATTTCTTTGTCTTAATATTGAATTGATTGTTTTTGTTGAACAACTTGCTGCATTGCTTTACCCCAATGGGTTTCTGTGTTTATAAGTAGGAGAGGAACATTTCACATTAGTGTCCAGATAATTCAGAAAACTGATGGTTAGGGCCGGGATTTGTTCTGTGAAGAACACGCAAAAGGAAACATTCATGAACTGGCAAACCATTCATCCAGATCCcatcccccacacacacatatccaaaATGCAGTATTTAAGCCCATTCCGGCCTGCAGCGAGTGCAGCATATAATTTAAGTAACAAAACAGCTAAATGAGAAGAACATCCAGATGATTACACATTCATCTTCCGCTTCCTTCCATCTGCTAGACACAAACGTGTCTGCACACACAACCTCCAATTAATCCCATGAGGCAGGCAGCACATTTGGTTCTATTTGTGTCTCCCTTAAAAACTTGAGATCTGTGAGGAAGAGcaataaagagagagaacaacgAAGCAAgccttacagaaataaaaaggggGTGGCAGGACCCAGAGGGTGAATGTGTAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376534 True 1793 lncRNA 0.39 1 10518471 10520263

Neighbor

gene id symbol gene type direction distance location
camsap2b LOC108261060,LOC108428284 coding downstream 57845 10393883 ~ 10460626 (-)
wdr47a wdr47,LOC108261062,LOC108428282,LOC107749106,LOC107730459 coding downstream 125964 10347841 ~ 10392507 (-)
LOC117599941 LOC107739197,LOC107573659 coding downstream 576159 9935223 ~ 9942312 (-)
prpf38b prpf38b,LOC107660074,LOC107568745,LOC107730443,LOC103395982 coding downstream 623704 9874783 ~ 9894767 (-)
LOC113533399 LOC108280347 coding downstream 729818 9715945 ~ 9788653 (-)
LOC113533548 NA coding upstream 49922 10570185 ~ 10584166 (-)
chrng LOC108428254 coding upstream 64255 10584518 ~ 10596849 (-)
LOC113533461 prss56 coding upstream 81435 10601698 ~ 10607930 (-)
LOC113533519 prss56,LOC107579557 coding upstream 91341 10611604 ~ 10632678 (-)
LOC113533482 NA coding upstream 114298 10634561 ~ 10640785 (-)
G317937 NA non-coding downstream 21518 10496720 ~ 10496953 (-)
G317918 NA non-coding downstream 171151 10344638 ~ 10347320 (-)
G317897 NA non-coding downstream 190921 10318011 ~ 10327550 (-)
G317849 NA non-coding downstream 215663 10234012 ~ 10302808 (-)
G317827 NA non-coding downstream 332428 10181696 ~ 10186043 (-)
G317943 NA non-coding upstream 350 10520613 ~ 10522428 (-)
G317953 NA non-coding upstream 6002 10526265 ~ 10526474 (-)
G317977 NA non-coding upstream 42104 10562367 ~ 10562528 (-)
G317976 NA non-coding upstream 47485 10567748 ~ 10568905 (-)
G318127 NA non-coding upstream 202643 10722906 ~ 10723111 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 1545196 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 1564361 8903824 ~ 8954110 (-)
G317176 NA other downstream 1632762 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 2029842 8477223 ~ 8488629 (-)
rps28 rps28 other downstream 2950337 7565081 ~ 7568134 (-)
ccl20a.3 LOC108261059 other upstream 7019 10527282 ~ 10528279 (-)
wu:fb63a08 LOC108280878 other upstream 1099613 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2388190 12908453 ~ 12928071 (-)
ccl25a NA other upstream 3092253 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 3144918 13665181 ~ 13680110 (-)

Expression


Co-expression Network