G318031 (alg3,LOC107692886,LOC107730451,LOC107557882)


Basic Information

Item Value
gene id G318031
gene name alg3,LOC107692886,LOC107730451,LOC107557882
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10706814 ~ 10707508 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376650
agCAGGTGAGCCAGTTTCTTCACCCCACCGCTCCACAGCAGGTAGGGCAGAGTGTGGAAATACCAAACATAGAACTGGTAGTGCAGCGAGCGGCAGAAGCACATGCCGATGAAGTTGGAAGAGAACAAAATGAGAACAATCTGATCAGCACTGAGCTTCTGTGTCATTGGCTTCCTCTCTGACGGATCTTTCAAAAGAGCCCAAACACTGCTCCCTgacctgtaaaacacacacacacacacacacacacacac

Function

symbol description
alg3 Predicted to enable dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity and glucosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to act upstream of or within protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Id. Orthologous to human ALG3 (ALG3 alpha-1,3- mannosyltransferase).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376650 True 254 lncRNA 0.50 2 10706814 10707508

Neighbor

gene id symbol gene type direction distance location
vwa5b2 LOC108280745 coding upstream 2322 10655409 ~ 10704492 (+)
ccl20a.4 NA coding upstream 172363 10532984 ~ 10534451 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 359426 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 418590 10196108 ~ 10288224 (+)
trnar-ucu_12 NA coding upstream 518990 10187751 ~ 10187824 (+)
mul1a LOC108280869 coding downstream 4200 10711708 ~ 10719149 (+)
ncapd2 ncapd2,LOC107692903,LOC107659972,LOC107749205,LOC107557881 coding downstream 131247 10838755 ~ 10860296 (+)
acsm3 acsm3,LOC108428295,LOC107749205,LOC107682913,LOC107735424 coding downstream 154451 10861959 ~ 10878656 (+)
map6d1 LOC108280841 coding downstream 172733 10880241 ~ 10897751 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding downstream 480290 11187798 ~ 11221863 (+)
G318016 NA non-coding upstream 58621 10647921 ~ 10648193 (+)
G317967 NA non-coding upstream 124522 10582093 ~ 10582292 (+)
G317964 NA non-coding upstream 131267 10575313 ~ 10575547 (+)
G317963 NA non-coding upstream 131662 10574814 ~ 10575152 (+)
G317946 NA non-coding upstream 182040 10524486 ~ 10524774 (+)
LOC117595750 NA non-coding downstream 134132 10841640 ~ 10911606 (+)
LOC113533665 NA non-coding downstream 138208 10845716 ~ 10846012 (+)
LOC113533661 NA non-coding downstream 139960 10847468 ~ 10847786 (+)
G318248 klhl24 non-coding downstream 252413 10959921 ~ 10987576 (+)
G318273 NA non-coding downstream 300440 11007948 ~ 11009146 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 137907 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 143820 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 728898 9958993 ~ 9977916 (+)
G317390 NA other upstream 1291650 9412323 ~ 9415164 (+)
LOC117599964 LOC107387363,LOC107676291,LOC107756568 other upstream 1893404 8811595 ~ 8813410 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other downstream 22838 10730346 ~ 10734088 (+)
per2 LOC108280459,LOC108439864 other downstream 692376 11399884 ~ 11464769 (+)
G318439 NA other downstream 759791 11467299 ~ 11469499 (+)
G319170 NA other downstream 2057547 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 2313634 13021142 ~ 13154527 (+)

Expression


Co-expression Network