G318128


Basic Information

Item Value
gene id G318128
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10723148 ~ 10724215 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376760
CTACTATCATCTCCTATTATCTCCTTTCATCTCTTCAGGCTGTGAGTTCTACATGCCAAAGCAAATTCTTGGACCTGTTAGTCAGTAGTCAAAAGTCCTCAGCAGGGTCCCCTTAGGCCTTTTGTCATCAGCCTGCAACCAAACCCCAAAAACCACAGACAGAGACATGTCCTGGTCTCAGCAAGGGAGGCACAAGCACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376760 True 201 lncRNA 0.48 2 10723148 10724215

Neighbor

gene id symbol gene type direction distance location
alg3 alg3,LOC107730451,LOC107660011,LOC107692886,LOC107557882,LOC107749127 coding downstream 11507 10704461 ~ 10711641 (-)
LOC113533482 NA coding downstream 82363 10634561 ~ 10640785 (-)
LOC113533519 prss56,LOC107579557 coding downstream 90470 10611604 ~ 10632678 (-)
LOC113533461 prss56 coding downstream 115218 10601698 ~ 10607930 (-)
chrng LOC108428254 coding downstream 126299 10584518 ~ 10596849 (-)
ece2a ece2 coding upstream 10939 10735154 ~ 10830170 (-)
yeats2 yeats2,LOC107578903 coding upstream 175050 10899265 ~ 10952633 (-)
klhl24a klhl24,LOC103026629,LOC107721788,LOC107659963 coding upstream 235684 10959899 ~ 10987648 (-)
LOC113533462 LOC108280822 coding upstream 270535 10994750 ~ 10995862 (-)
LOC113533463 LOC108280824 coding upstream 272924 10997139 ~ 11001553 (-)
G318127 NA non-coding downstream 37 10722906 ~ 10723111 (-)
G317976 NA non-coding downstream 154243 10567748 ~ 10568905 (-)
G317977 NA non-coding downstream 160620 10562367 ~ 10562528 (-)
G317953 NA non-coding downstream 196674 10526265 ~ 10526474 (-)
G317943 NA non-coding downstream 200720 10520613 ~ 10522428 (-)
G318198 NA non-coding upstream 117453 10841668 ~ 10843291 (-)
G318202 NA non-coding upstream 121508 10845723 ~ 10921562 (-)
G318293 NA non-coding upstream 282937 11007152 ~ 11009170 (-)
G318479 NA non-coding upstream 462982 11187197 ~ 11187400 (-)
LOC113533221 NA non-coding upstream 670666 11394881 ~ 11411164 (-)
ccl20a.3 LOC108261059 other downstream 194869 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 1749873 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 1769038 8903824 ~ 8954110 (-)
G317176 NA other downstream 1837439 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 2234519 8477223 ~ 8488629 (-)
wu:fb63a08 LOC108280878 other upstream 895661 11619876 ~ 11705877 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 2184238 12908453 ~ 12928071 (-)
ccl25a NA other upstream 2888301 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 2940966 13665181 ~ 13680110 (-)
theg NA other upstream 4007519 14731734 ~ 14745487 (-)

Expression


Co-expression Network