LOC117595750


Basic Information

Item Value
gene id LOC117595750
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 10841640 ~ 10911606 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU376787
attaaattaaaagtgaAAGCTAATGGTGGTTGAGCCCAGTGATGAGACTATGGCATCTGTGAGCTGAATGACCCAGAGATTGTGCTCTGTGATGGTGGGTAATCTTGGCTGAGCAGTGGAGACTGACTGCCTTGCTGTAAGGGCCCACCTACAGCACAGCTAGCAACCAATCAGCATTCTTTGTTTCCCAAAGAAATGGGTCTAGCAAACTGATGGGAGCTTgcacatattctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctga
>XR_004576927.1
GCCCAGTGATGAGACTATGGCATCTGTGAGCTGAATGACCCAGAGATTGTGCTCTGTGATGGTGGGTAATCTTGGCTGAGCAGTGGAGACTGACTGCCTTGCTGTAAGGGCCCACCTACAGCACAGCTAGCAACCAATCAGCATTCTTTGTTTCCCAAAGAAATGGGTCTAGCAAACTGATGGGAGCTTgcacatattctctctctctctctctctctctctctctctctctctccctctccctccctctctctatctgtgtctctctctctctctctctctctctgatagtAGGGTCACATTTCTCTTTGTGGTCGTACAGCTTTGAGCATGTTCTTTGGTAATCTGAGGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU376787 False 305 lncRNA 0.47 3 10841640 10911606
XR_004576927.1 True 354 lncRNA 0.49 1 10841673 10842026

Neighbor

gene id symbol gene type direction distance location
mul1a LOC108280869 coding upstream 122491 10711708 ~ 10719149 (+)
vwa5b2 LOC108280745 coding upstream 137148 10655409 ~ 10704492 (+)
ccl20a.4 NA coding upstream 307189 10532984 ~ 10534451 (+)
kirrel1b kirrelb,LOC108280344,LOC108428281,LOC107749112,LOC107659821,LOC107557870,LOC107721762 coding upstream 494252 10291830 ~ 10347388 (+)
cadm3 cadm3,LOC107749121,LOC107600075 coding upstream 553416 10196108 ~ 10288224 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding downstream 276192 11187798 ~ 11221863 (+)
ap1s3b ap1s3b,LOC108280899,LOC108428267,LOC107738797,LOC107660160,LOC107679405,LOC107552497,LOC107567705 coding downstream 326633 11238239 ~ 11253682 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding downstream 396415 11308021 ~ 11315878 (+)
LOC113533220 LOC108280463,LOC108280465,LOC108280461,LOC108428334 coding downstream 412521 11324127 ~ 11342139 (+)
LOC117599968 LOC108280463,LOC108280461,LOC108280465 coding downstream 445964 11357570 ~ 11374709 (+)
G318031 alg3,LOC107692886,LOC107730451,LOC107557882 non-coding upstream 134132 10706814 ~ 10707508 (+)
G318016 NA non-coding upstream 193447 10647921 ~ 10648193 (+)
G317967 NA non-coding upstream 259348 10582093 ~ 10582292 (+)
G317964 NA non-coding upstream 266093 10575313 ~ 10575547 (+)
G317963 NA non-coding upstream 266488 10574814 ~ 10575152 (+)
G318248 klhl24 non-coding downstream 48315 10959921 ~ 10987576 (+)
G318273 NA non-coding downstream 96342 11007948 ~ 11009146 (+)
G318331 NA non-coding downstream 195189 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding downstream 201347 11112953 ~ 11119827 (+)
G318426 NA non-coding downstream 491658 11403264 ~ 11404056 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 107552 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 272733 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 278646 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 863724 9958993 ~ 9977916 (+)
G317390 NA other upstream 1426476 9412323 ~ 9415164 (+)
per2 LOC108280459,LOC108439864 other downstream 488278 11399884 ~ 11464769 (+)
G318439 NA other downstream 555693 11467299 ~ 11469499 (+)
G319170 NA other downstream 1853449 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 2109536 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2925827 13837433 ~ 13897914 (+)

Expression


Co-expression Network