G318439


Basic Information

Item Value
gene id G318439
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11467299 ~ 11469499 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU377149
GCTGATGTTGCAGTGTTGTTAGGTTGATACAAGGCTGTTTCACCATGAAGAGCTTTTCAGAACTGTTACAGACACTTCTCATTCCCAGCTAAAATCTCACACATGTCCAGTCTTTCTGAACTACATAATAGCCTGCGCACTAACAGCTACACACGTTCTGTTGCATACATCTCACTGCTATGTTTAAGGCATGTGTCCAGGTCTACCAGGGCCTCCATACAGATTTAGAGTAGAACACAGTGGGCAGGTTATCCTGAGCGTCCCGGCTGTCCACGTGACTGTGCTCGGTGTCGGTCTCGTCGGTGTCTGAGCACAGGTCGTCGCTTGAGGTGCTGGACGGGGACGGGGAGAGAGCTGAAGGTCTGCCGGTGGCACTGGCTTCGCGTGGGGAGAGCACAGCGTACATCCCGTCCCCCGGCCAAGCCCCAGCGTTCCCACACTCTCCCATCAAATCACAGAGCAGATCCTGGAAGCGATCCTCGTCGTTCAGAGGCATGCACTCCAGCAGATGGTTGAGCAGATCCGCCGCGATGGTGGCGTCGATACCTGGACAGCTGGAGACGAACGTGTGCACCTCATGCATGCACTGGATGTAACCAGCGGCGAAGCGCTCACTCGCCTCGCGATTCATGCTGTCAGCTGCTGGAGTAAAGACAAAACACATGAGTGAAACACTCTGAATCCCAAAGTGGATCCATTTTTCCGCTTTAAGAGGTGAACATGCACTGGCAGCTGCTGCACGCGCACGCCGAGCTCACCTTTCGCTCTGTTTTGAAGAATACTTTCCACGTGCTTCACGGTCATCTCCAGGACTTCAGCGTTCTCCATCTTTGTCTGCGCCTAAACATGACCCAAAGAGCGTTAGAGTGATTATGCGTGCTGCTTCTGCACAAAACGAGCTGTCATCGTGTGTGTAGGCGTCAGACGTGGAAAAGTGATGAACGCAACTTACGTCTGAGTCGCTCAGGAGCAGGCGCAGCTCCTGCAAACTTTCATTAATGCGGGCGCGCCTCTTTTTCTCCACCAGCGGCTTTCTCGTCTGCACAGATGCAATATCACATAGCATAAGCATTGCTGCAAAGACCAGCAGAGCCAGGCATGATGGGAAGAGCACACAGTACCTTTCTGTCTCCTTTGATCCCGTAGTAGTCATCCTCACTCTTGCCATTGCGGGAGGCAGGGGCCATGTTGCTGTGTTTCCGatatccagagagagagagagagagagagcgctccAAACAAGCACGCAGTGCCGTTACGACTGCTGAATGGAGGGCAGATGGCCGGCGAGCGCAGTCTGAGACAAAGGTCTACACACGGTGCTAACAAGCGAGGCGGGTATTGTGCAAAAGTGGGCGACCAAGGGCTGCATTTATGGAGCCTGATTTACATGTGAATGGAGCGCGGACTGCGCGAGAGAGCTGACGGCGAGCTCGCGCATAAAGAGAGCCAATCATCTGCAGCGCCTTTGTCTCGCCTTCGAAAACCAACCCACCCTGAAACGTGTGTACTGGAGGAGAAGCATTCCCTTCCCCTGTCCCAGATCAGCGCTCTGTTCAGTCTGTTCAGTCCTACAGGCCAGAGTTTGAGTaaatccaacaacaacaacaacaacaacaacaacagcagcagcaacaacaacaactacaacagcagcaacaactacaacaccaacaccaacagcaacaacaacaacaacaacaataacagcagcagcaacaacaacaaacaacaataacagcagcaataacaaactactactactactactactaataataataataatagaggaTGTTAACCAGTGATGATGTTGgatattgttttttattagttaaaataAGTTTGTTAATGATTTGCAAGTTACAAACATCTGTACTGAATGACTTTGtgaatgaccaatcagaacagagcATTAATAAACCCCAGTCAAAATGAGAATTAGCTATTTCTGGATTATCACCTTTAATGTGCCATCCATGTGTTTATctgcaattaattaataactgcaattaaattatttaataaaacgtTTTAATTGACTTGGAATATTAATAGTGTTTTGAATGATTTGCTATCTAAATGCCTCTCAGACTAACCCCAGACTTTCCACTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377149 True 2118 TUCP 0.48 2 11467299 11469499

Neighbor

gene id symbol gene type direction distance location
LOC117599968 LOC108280463,LOC108280461,LOC108280465 coding upstream 92590 11357570 ~ 11374709 (+)
LOC113533220 LOC108280463,LOC108280465,LOC108280461,LOC108428334 coding upstream 125160 11324127 ~ 11342139 (+)
LOC113533219 LOC108280465,LOC108280463,LOC108280461 coding upstream 151421 11308021 ~ 11315878 (+)
ap1s3b ap1s3b,LOC108280899,LOC108428267,LOC107738797,LOC107660160,LOC107679405,LOC107552497,LOC107567705 coding upstream 213617 11238239 ~ 11253682 (+)
LOC113533503 cul3,LOC108261246,LOC104924156,LOC100710156,LOC107099750,LOC108240497 coding upstream 245436 11187798 ~ 11221863 (+)
itm2cb itm2c,LOC107569273,LOC107679406 coding downstream 4346 11473845 ~ 11479551 (+)
gigyf2 gigyf2,LOC103130361,LOC103143041 coding downstream 28828 11498327 ~ 11533561 (+)
snorc c20h2orf82 coding downstream 65634 11535133 ~ 11544725 (+)
trnap-agg_14 NA coding downstream 78609 11548108 ~ 11548179 (+)
trnai-aau_17 NA coding downstream 79616 11549115 ~ 11549188 (+)
G318426 NA non-coding upstream 63243 11403264 ~ 11404056 (+)
G318331 NA non-coding upstream 298160 11106795 ~ 11169139 (+)
G318332 mbnl1,LOC108280526,LOC107567699,LOC107679403,LOC107745615 non-coding upstream 347472 11112953 ~ 11119827 (+)
G318273 NA non-coding upstream 458153 11007948 ~ 11009146 (+)
G318248 klhl24 non-coding upstream 479723 10959921 ~ 10987576 (+)
G318647 NA non-coding downstream 304444 11773943 ~ 11774148 (+)
G318658 NA non-coding downstream 329459 11798958 ~ 11799181 (+)
LOC117599957 NA non-coding downstream 363809 11833308 ~ 11846411 (+)
G318683 NA non-coding downstream 401268 11870767 ~ 11870966 (+)
G318697 NA non-coding downstream 555709 12025208 ~ 12025443 (+)
per2 LOC108280459,LOC108439864 other upstream 2530 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 733211 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 898392 10563821 ~ 10568907 (+)
capn10 capn10 other upstream 904305 10536431 ~ 10562994 (+)
pip4p1a tmem55b,tmem55ba,LOC106600488 other upstream 1489383 9958993 ~ 9977916 (+)
G319170 NA other downstream 1295556 12765055 ~ 12803019 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other downstream 1551643 13021142 ~ 13154527 (+)
LOC113533270 mtcl1 other downstream 2367934 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 2610750 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 2916739 14386238 ~ 14466753 (+)

Expression


Co-expression Network