G318639


Basic Information

Item Value
gene id G318639
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 11689489 ~ 11693334 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU377432
taaatttgcaataactgcactcttagaaaaagagTTCTCCAATGGTTCTTCAGAGTTTCTAGTTTTatcttattaaatgtttttaaaagaaaatataaaaaaatggaatcacattttctaattagttatttatttttgctgttatcATCTAACAGTGTttgttaaatcattattttcaaCATGAATTGTGACAccagtttaaattaaattacatggAATTAGTATGATATGATAAAATGAAACTGACGCAAAATAATTGATAGTGAAGGTAAGGTGAAATAAACTTTcaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU377432 True 294 lncRNA 0.24 2 11689489 11693334

Neighbor

gene id symbol gene type direction distance location
acsl3b acsl3b,LOC108280780,LOC108439858,LOC107738798,LOC107745612,LOC107567703,LOC107660143,LOC107552494,LOC105907082 coding downstream 117099 11549783 ~ 11572390 (-)
trnaw-cca_17 NA coding downstream 141050 11548368 ~ 11548439 (-)
LOC113533529 gpr55 coding downstream 193098 11492594 ~ 11496391 (-)
hes6 hes6 coding downstream 220702 11467120 ~ 11468787 (-)
gbp2 LOC108280462,LOC108280460 coding downstream 364243 11287176 ~ 11325246 (-)
LOC113533285 ephb1,LOC108430182,LOC107549839,LOC107671589 coding upstream 370532 12063866 ~ 12363593 (-)
gpc1b LOC108280809 coding upstream 743369 12436703 ~ 12523017 (-)
gpc5c LOC108280917 coding upstream 941723 12635057 ~ 12722764 (-)
LOC117595730 NA coding upstream 1031600 12724934 ~ 12726494 (-)
LOC113533469 NA coding upstream 1059316 12752650 ~ 12754252 (-)
LOC117599995 NA non-coding downstream 57568 11629570 ~ 11631921 (-)
LOC113533221 NA non-coding downstream 278325 11394881 ~ 11411164 (-)
G318552 NA non-coding downstream 287987 11400665 ~ 11401502 (-)
G318479 NA non-coding downstream 502089 11187197 ~ 11187400 (-)
G318293 NA non-coding downstream 680319 11007152 ~ 11009170 (-)
G318660 NA non-coding upstream 108313 11801647 ~ 11801862 (-)
G319059 NA non-coding upstream 890531 12583865 ~ 12584089 (-)
G319163 NA non-coding upstream 940559 12633893 ~ 12648886 (-)
G319178 NA non-coding upstream 1061434 12754768 ~ 12779226 (-)
G319182 NA non-coding upstream 1070920 12764254 ~ 12765991 (-)
ccl20a.3 LOC108261059 other downstream 1161210 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 2716214 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 2735379 8903824 ~ 8954110 (-)
G317176 NA other downstream 2803780 8883649 ~ 8885709 (-)
vcpip1 vcpip1 other downstream 3200860 8477223 ~ 8488629 (-)
LOC113533649 LOC108280860,LOC108433106 other upstream 1215119 12908453 ~ 12928071 (-)
ccl25a NA other upstream 1919182 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 1971847 13665181 ~ 13680110 (-)
theg NA other upstream 3038400 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 3529444 15222778 ~ 15231580 (-)

Expression


Co-expression Network