G319276


Basic Information

Item Value
gene id G319276
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13022327 ~ 13023135 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU378126
GTTAAATGGAAGATTCATCATATCTCTTTCAGTCTAACAGAATCACAGAGCACACTCTGACCAGGAAATAGGAATCAGACATTGCTCCAAAAAAAAGCAGTACACTGCCTAAACGCCTAATCAGTCTTACATTGCCTATTAAGTATAAAGTGTAATCAAATCCTCACATTTACACCCTGTTCTGCAGCACAGAGTACTCCGTTTATGTTGAGGGCTTTCACATTTGAGACTGGCATATTAGCTGCTCCAACCTTAGCGAAGGTGTTATGTCAACTCGAGCAGGCCAGTAATGTTGCGTTTAACGCTGACGCCCTGTCTTCAGTTCTCTTTTCATCAGCACTCGGtctctttgttctctctctgtgtctttctatctctctggcACTCTGTAGCTCCTTCTCTGGCTTGTAGGATTCACAGGCATAAAGCTGTAAGTCAGCAAAGTTAAAAAAGAGTCCATATTGTTTCATTAAACAGCTGAATGAGAGAAATAAGTATGGATAGAAATCCTTTTCCTCAACAGAAAGCTACTGATCTAGTGTAAAgtaggggagaaaaaaaacacatcctgaCTTATTGATGCTGTCCATCAGGCTCATTAGTCTGGAGCTGAAGCTATGTATAACACTGTCACCTTTCAGCCTATAGCAGCCTTCTGTCATTCAAATCCTTCACATTCTGCCTTGCAACAGTACATATTCATTGCTGTATTTCCAATTAGCCAGGCAGTTTTCCGTTTATTACATACGGATACAGAATTTGTGGTATCAATTGATATCTGTTCATTTTGACACTGTTGTGAATGGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378126 True 809 lncRNA 0.40 1 13022327 13023135

Neighbor

gene id symbol gene type direction distance location
abhd17aa abhd17aa,LOC108280794,LOC108433103,LOC105904035,LOC107757810,LOC107698472,LOC107599293,LOC107600230,LOC106584389 coding upstream 7773 13004794 ~ 13014554 (+)
LOC113533117 LOC108280188,LOC108433071 coding upstream 39478 12968314 ~ 12982849 (+)
LOC113533470 NA coding upstream 225503 12782537 ~ 12796824 (+)
LOC113533522 NA coding upstream 593796 12416510 ~ 12428531 (+)
pax3a pax3a,LOC108280216,LOC108439877 coding upstream 1399482 11596699 ~ 11622845 (+)
rorcb rorcb,LOC108280913,LOC108433101,LOC107757806,LOC107698501 coding downstream 162796 13185931 ~ 13216057 (+)
sh3gl1a sh3g1,LOC108433099 coding downstream 194355 13217490 ~ 13241937 (+)
stap2a stap2a,LOC108280350,LOC108433098,LOC107713653,LOC107698505,LOC107757807 coding downstream 230475 13253610 ~ 13265447 (+)
sema4e LOC108280345 coding downstream 244619 13267754 ~ 13285252 (+)
prkab2 prkab2,LOC108280523,LOC108433095,LOC102781441,LOC101470867,LOC100694198 coding downstream 276373 13299508 ~ 13305437 (+)
G319198 NA non-coding upstream 216595 12805522 ~ 12805732 (+)
LOC117599962 NA non-coding upstream 258600 12761836 ~ 12763727 (+)
G319087 NA non-coding upstream 394437 12627675 ~ 12627890 (+)
LOC117599992 NA non-coding upstream 396573 12622299 ~ 12625754 (+)
LOC117599989 NA non-coding upstream 449920 12559513 ~ 12572407 (+)
G319286 NA non-coding downstream 13887 13037022 ~ 13037736 (+)
G319314 NA non-coding downstream 64128 13087263 ~ 13087475 (+)
G319318 NA non-coding downstream 79212 13102347 ~ 13102608 (+)
G319330 NA non-coding downstream 117139 13140274 ~ 13140482 (+)
G319334 NA non-coding downstream 125517 13148652 ~ 13148862 (+)
G319170 NA other upstream 219308 12765055 ~ 12803019 (+)
G318439 NA other upstream 1552828 11467299 ~ 11469499 (+)
per2 LOC108280459,LOC108439864 other upstream 1557558 11399884 ~ 11464769 (+)
camk2n1a camk2n2,camk2n1a,LOC107659987,LOC107600060,LOC107557885 other upstream 2288239 10730346 ~ 10734088 (+)
eif4e2 eif4e2,LOC107600102,LOC107579667,LOC107749152,LOC107730458 other upstream 2453420 10563821 ~ 10568907 (+)
LOC113533270 mtcl1 other downstream 814298 13837433 ~ 13897914 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other downstream 1057114 14080249 ~ 14127012 (+)
rab31 rab31 other downstream 1363103 14386238 ~ 14466753 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other downstream 1614646 14637781 ~ 14666508 (+)
ly97.3 LOC108280687 other downstream 1804107 14827242 ~ 14828778 (+)

Expression


Co-expression Network