G319606


Basic Information

Item Value
gene id G319606
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13305529 ~ 13309043 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU378512
tttttttgtttgcagtattgctttttatttgcaaacaaaactaaacagcaTGGCTTAACAACATATGCTGCACTGCTTTACAAACATAGCATCCGGGATAAATTCAAGTGTTTAAATTCTATTTCCAAAATAGCACACCTCACAAAGTATTGTAACTTCAAAcctcttttcattttatgatACACTGTCCATACACACTACAGCATTCCACTACATCTTTGGAGGGAATAAGCATCAAACAGTTTCATCAAACAGCAATTTAAAACACCATGAATAATTCAATGCATGTCAAATATCataaaaacctgaaaaacaaaacaaaaaaaaaacaaccaacctTTGACCATTACCGAAAACCACACAGCTTTTATACTAAAGACCTCAGCCTCTACAGCCACCAACACATCCGGATCATCTCactacaaatacagtaaatcAACATTCATAATACATACAACAGCAAGAATTACTAATACAATGCACACTGATACAAACATTTCACTCGGCTATTGTACTGAAGAGCGTATTGTGCGTGTTCAACTAGAGCCTACAGTACGAGATTTGTCAACTGCATAGCTTAGGAACTGAAAAAAGCTTTCCGTCTGAACCCGTCACAGTGAATATATAGTTAAAGTGCTTACACAATCGCAGTGAAAGGCAACAGCATGcatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378512 True 673 lncRNA 0.36 2 13305529 13309043

Neighbor

gene id symbol gene type direction distance location
cactin cactin,LOC103479278,LOC103479458 coding downstream 10551 13285372 ~ 13294978 (-)
LOC113533516 NA coding downstream 140312 13161536 ~ 13165217 (-)
cdc34b ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474 coding downstream 305542 12986262 ~ 12999987 (-)
kcnj9 kcnj9,LOC108280861,LOC108433105,LOC107698496,LOC107713649,LOC107600231,LOC107757805,LOC107599257 coding downstream 340748 12940528 ~ 12964781 (-)
svilb LOC108280625 coding downstream 400093 12844080 ~ 12905436 (-)
LOC113533394 LOC108280525 coding upstream 77348 13386391 ~ 13388837 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding upstream 280526 13589569 ~ 13592666 (-)
im:7138239 LOC108280258,LOC108439873 coding upstream 285564 13594607 ~ 13599684 (-)
capsla LOC108280735,LOC108439882,LOC107552688 coding upstream 349651 13658694 ~ 13661180 (-)
abhd8a abhd8a,LOC108280232,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC103352801 coding upstream 384360 13693403 ~ 13703418 (-)
G319568 NA non-coding downstream 161258 13144063 ~ 13144271 (-)
G319559 NA non-coding downstream 168940 13136385 ~ 13136589 (-)
G319557 NA non-coding downstream 169669 13135604 ~ 13135860 (-)
G319544 si:ch211-168n16.1,LOC108433102,LOC108280795,LOC107713651,LOC107600229,LOC107757803,LOC107662975 non-coding downstream 186418 13118788 ~ 13119111 (-)
G319496 NA non-coding downstream 236007 13069299 ~ 13069522 (-)
G319673 LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 non-coding upstream 113308 13422351 ~ 13425952 (-)
G319674 NA non-coding upstream 118968 13428011 ~ 13428963 (-)
G319754 NA non-coding upstream 278048 13587091 ~ 13587531 (-)
G319766 NA non-coding upstream 320204 13629247 ~ 13629457 (-)
G319906 NA non-coding upstream 522812 13831855 ~ 13834798 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 377458 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1599652 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 2777250 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4332254 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 4351419 8903824 ~ 8954110 (-)
ccl25a NA other upstream 303473 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 356138 13665181 ~ 13680110 (-)
theg NA other upstream 1422691 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 1913735 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2378039 15687082 ~ 15724356 (-)

Expression


Co-expression Network