G319674


Basic Information

Item Value
gene id G319674
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13428011 ~ 13428963 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU378597
CACATACAATTAAACCCAGACAAGGAATGATACAAATTACTTTTTTGGTTTAGTCAGGTGTACTGCAGCCATCAAAGACCCACGGTTTAAAACTACAGAGTATGCTTTAACCTCGCTGATCATATAGACCTATGACCACTTTCTCATCTCAATGGTCCCAAAATCCAACAAGTACGTTCCTTTGGAGCCCCCATTTCCTGTCAGCATGCACAGTTACACGTATTACCTAGGAACATTCCCAACATTCTCATTCTCTAAGATCCTTAATCTTAAATATGCTGCAAGCAGTTCTAACCTCAGTTTCATCCCAAAACTGTCTTCCTCCTctttaaatcaaatatattaaGGCCCTCTGGGAATAAAGGCACCATGCACTAATAAATCCAGCTGTCTACCCACATCATGCATCcttaatttctaaaataaacatctgtcaGAAAGCCAGAAAAACTGTCAAAATCCTCCAAGCTGAAACGCAATAACGATTTATGGAACTTAATTAACCGAGTAGCTTCTCACACCAGTGTCTCCCAGTTCATGCGCCCCTGCGGCTGTTTGACAGCATTTTCTGATTCTAATAACAGTTATGCAACTGCGCACAAAGAACAATAACCACTTATCAGCATTAATTAACCAAAAGAAAAGCCACCCACACCAGTATTTTCCCCGTTCTGCAGTTCCACAGCCTTGTACAGTTTCTTAGTTCCTCAGCccttaaaataataacaacaagcttttcatgaatgtaaatcaAACGTATTAGTTAGTAAACTCTTAACGTTAAGACTAAAGGGATCTTTACTCTCAGAACCCAGAATGGAATAGGCAGGAaggagggaatacaccctgaatgagatgccagtccatggcagggcaccatgcacacacacattcatatacttattcacacctagcagCAATTTAGAGTAACCTGTCCCCTACCAGCATGTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378597 True 953 lncRNA 0.41 1 13428011 13428963

Neighbor

gene id symbol gene type direction distance location
LOC113533394 LOC108280525 coding downstream 39174 13386391 ~ 13388837 (-)
LOC113533154 pde4dip coding downstream 50833 13306777 ~ 13377178 (-)
cactin cactin,LOC103479278,LOC103479458 coding downstream 133033 13285372 ~ 13294978 (-)
LOC113533516 NA coding downstream 262794 13161536 ~ 13165217 (-)
cdc34b ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474 coding downstream 428024 12986262 ~ 12999987 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding upstream 160606 13589569 ~ 13592666 (-)
im:7138239 LOC108280258,LOC108439873 coding upstream 165644 13594607 ~ 13599684 (-)
capsla LOC108280735,LOC108439882,LOC107552688 coding upstream 229731 13658694 ~ 13661180 (-)
abhd8a abhd8a,LOC108280232,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC103352801 coding upstream 264440 13693403 ~ 13703418 (-)
LOC113533381 LOC108280169,LOC108439884,LOC100333521,LOC107696163 coding upstream 276337 13705300 ~ 13710697 (-)
G319673 LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 non-coding downstream 2059 13422351 ~ 13425952 (-)
G319606 NA non-coding downstream 118968 13305529 ~ 13309043 (-)
G319568 NA non-coding downstream 283740 13144063 ~ 13144271 (-)
G319559 NA non-coding downstream 291422 13136385 ~ 13136589 (-)
G319557 NA non-coding downstream 292151 13135604 ~ 13135860 (-)
G319754 NA non-coding upstream 158128 13587091 ~ 13587531 (-)
G319766 NA non-coding upstream 200284 13629247 ~ 13629457 (-)
G319906 NA non-coding upstream 402892 13831855 ~ 13834798 (-)
G319974 NA non-coding upstream 511648 13940611 ~ 13945349 (-)
G319975 NA non-coding upstream 519345 13948308 ~ 13949723 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 499940 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1722134 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 2899732 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4454736 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 4473901 8903824 ~ 8954110 (-)
ccl25a NA other upstream 183553 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 236218 13665181 ~ 13680110 (-)
theg NA other upstream 1302771 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 1793815 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2258119 15687082 ~ 15724356 (-)

Expression


Co-expression Network