G319754


Basic Information

Item Value
gene id G319754
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13587091 ~ 13587531 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU378684
GTAATTTAAAGATACATGTAGCTATAGGTAATAAATCATTAGGCTGGAAGAACAAAGCACAAACATTTAATGAAGAACagaacacaaacatttaaacttacAATTAGGTGTCCACTGAGAATCGGTGTACAACATGTGAAAAACAGAACTGAATATCAGAAAAATTTTTTCAAACCACAgtagacaaacagaaagagaagctcatgaaaataaaaacagataacaGTGCAAGTACATTACAGACAGAGAACTGATGAAGCAGAATAATTCTGTTTATACAACCAGGTTGTTgagtgcaaaagaaaaaaaaaaaaactatttctggCTCAGTACTGGTGTAGTGAATTTTCACACCATTAATGATATTTAGCTTACAGGCCTAAACAAGCTAGGCCAAGGGAAGTTAGGTATCTatatgtagtaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0008519 ammonium transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378684 True 441 lncRNA 0.32 1 13587091 13587531

Neighbor

gene id symbol gene type direction distance location
LOC113533394 LOC108280525 coding downstream 198254 13386391 ~ 13388837 (-)
LOC113533154 pde4dip coding downstream 209913 13306777 ~ 13377178 (-)
cactin cactin,LOC103479278,LOC103479458 coding downstream 292113 13285372 ~ 13294978 (-)
LOC113533516 NA coding downstream 421874 13161536 ~ 13165217 (-)
cdc34b ub2r1,cdc34b,LOC108280790,LOC108433104,LOC105020474 coding downstream 587104 12986262 ~ 12999987 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding upstream 2038 13589569 ~ 13592666 (-)
im:7138239 LOC108280258,LOC108439873 coding upstream 7076 13594607 ~ 13599684 (-)
capsla LOC108280735,LOC108439882,LOC107552688 coding upstream 71163 13658694 ~ 13661180 (-)
abhd8a abhd8a,LOC108280232,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC103352801 coding upstream 105872 13693403 ~ 13703418 (-)
LOC113533381 LOC108280169,LOC108439884,LOC100333521,LOC107696163 coding upstream 117769 13705300 ~ 13710697 (-)
G319674 NA non-coding downstream 158128 13428011 ~ 13428963 (-)
G319673 LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 non-coding downstream 161139 13422351 ~ 13425952 (-)
G319606 NA non-coding downstream 278048 13305529 ~ 13309043 (-)
G319568 NA non-coding downstream 442820 13144063 ~ 13144271 (-)
G319559 NA non-coding downstream 450502 13136385 ~ 13136589 (-)
G319766 NA non-coding upstream 41716 13629247 ~ 13629457 (-)
G319906 NA non-coding upstream 244324 13831855 ~ 13834798 (-)
G319974 NA non-coding upstream 353080 13940611 ~ 13945349 (-)
G319975 NA non-coding upstream 360777 13948308 ~ 13949723 (-)
G319995 rnf126,LOC107750906,LOC107569633,LOC107596227,LOC107754583 non-coding upstream 422378 14009909 ~ 14010528 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 659020 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1881214 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 3058812 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4613816 8969204 ~ 8973275 (-)
pitrm1 pitrm1,LOC107698483,LOC107679400 other downstream 4632981 8903824 ~ 8954110 (-)
ccl25a NA other upstream 24985 13612516 ~ 13615743 (-)
LOC113533556 LOC108280202 other upstream 77650 13665181 ~ 13680110 (-)
theg NA other upstream 1144203 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 1635247 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2099551 15687082 ~ 15724356 (-)

Expression


Co-expression Network