LOC113533556 (LOC108280202)


Basic Information

Item Value
gene id LOC113533556
gene name LOC108280202
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 13665181 ~ 13680110 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU378748
CACTCAGATATTTACAGAGGCTTACAGCCTATCCTGTGAATGTATCCACCACACCAAAGGAGATGCAGTGAGGGCATGCAAAGCTCTTCTTACTCACTGAGATGAATGATCTGCCTTTTGCTTTCTGTGTGGTGAATTCCTGCCTCAGATTCCTTTTTAAGTCCAAACCCATAAAAGCGAGGAATCATCATTTACCTGCCTAAGAGATACCCAGGACGCCCGGATTCATACACGCTCTACTGCTTTAAAACAGACAATTTACATGCTGAAAAAGATTAGAAAATTTCACTCTGCTAGCCCTGGAT
>XM_026925768.2
CTCCAATACACTCAGATATTTACAGAGGCTTACAGCCTATCCTGTGAATGTATCCACCACACCAAAGGAGATGCAGTGAGGGCATGCAAAGCTCTTCTTACTCACTGAGATGAATGATCTGCCTTTTGCTTTCTGTGTGGTGAATTCCTGCCTCAGATTCCTTTTTAAGTCCAAACCCATAAAAGCGAGGAATCATCATTTACCTGCCTAAGAGATACCCAGGACGCCCGGATTCATACACGCTCTACTGCTTTAAAACAGACAATTTACATGCTGAAAAAGATTAGAAAATTTCACTCTGCTAGCCCTGGATGTGCCTATGCTGAAGGATGTGGAAGATCCTAGATTTCCTCCAGGGTATCCTGACTCATATGAATGATGTAAGCACTCAAGAAAAGTCTGGAAACGGCGTTACCATGACAAGGAAGCTTCAGTAGTAAACTGTGTCTACCATTTATACTGCATCCTGACAACCCAACCCTTCCCAACCCAACCCAAACCAGCCCAGACGAGCCCAGCTTAGTCAGGgggttccttccttccttccagaATACATGGAGGTAAAAGGCGCAGGGGAAGCATGATCTATGGTCCCCAATCCTGGCTTACGGAACAAAATGAGGGATTTCCCCTCCCAACCTCTTCCCTGAGGTCAACCCAACACAACGCCACCCTGATAAGTCCGACTTAGCGGGGCACTCGAGTTTCAATGCTCCACGCCGTTCTAAGATGAAGTTATGGAAAAAGGCCATTTTTGCCTTTACACTACTTagtgctgctctctctctcctgctcatcATAACAATGATATCTGCTGGGTCCATCATCCCCTGGGCCTCAGCTATGTCTGTACATCCTTCAACAATAgcaccatcaccaccattatcaacatcatcatcttcacccATGGTGACCAGTCGTCGGCGGGTGGCCAGAGCATCTGAGGACATTGGTTCCCTCCTATCTGAGTTTTCCTACCTGTTTCAGAGCTTCACTGAGGGTGAGCTGCAGAGGGTCATCAGGTCACTTGTGGACAGGAAAGTTGGGAGAAGGACCAAGCGGGCGAAAAGCGCAGAGGCATGCTCATTGCACCAGGTGGTGCTAACAGTGAGCGAGCTGGGCCTGGGCTATGAAAGCGATGAGACAGTGCGCTTCCGTTACTGCAGAGGGAAGTGCAATAGACGCCTCAGCAACTATGACATGGTGCTGAAAAACGTGATCCTGAGCAAGGCACCCGAGAAAGACATAACCACTAATGGGGGCACGGCTAAGACAGAGAGGGCGCCCTACAGCCGCTGCTGCCGGCCCACCAAATACGAGAACATGTCATTCTTTGACAATAAGGCAAAGTTCTTCACCATTCAGGACGTGTCAGCCAGAAAGTGCGGCTGTGTGTGACACTGCAGGGTTTTTTCTGAGATGATTGTAGCAAATGAGGCCACCACAGTCATGGGATTATCTAAGCGATtaggtgtgtgtatggatggGGGCTTCAGAAAGAGGCTAGAATCAAATAGGTGGAAGTGGAAGCTGAACTCACTTGGAGAATCCATGCTGAATCCATGCATTTCATAATCCAAGCCACAGGCTAGAAGGTTGTGTTTGACCCTCTGGCAGTGCAGAAGGTAGGAAGTTTTGTGATTATGCTTTTAAGGGTTTCTGCAGAGTCTAATGCAGTTTTGagtttgaaagaaaaaagatgctTTAATGATTTGATGGCATGTGAAGTAGCAACCTTCAGTGCTAAGACACAACACTGGCCTTTTTCCTGAAGACATGAAACTGTTACCGAGTGGCAACTGCAACAGTGAAAATCCAGAATAAGCAATTCCCATATGGACTGAAGCAGTAtagaaaagtattttttttggtaacaaaTTCTATCTGTATATTCAACTATGAAGTTATCCACAGCTACCTcatttgtatttggttacagAAATATGCATCACACCAATCTGCTTGTTGTCAACTATTCATtgatacaaacatttaaaaatacagtcttCTCAGGTCAAATACTGTAAAGAACAGCATGCACTGTTACTTGAAGTGAAAACCCAGCAACTTACACCCTCATTTCATTTGCTCTTGTCAAGAGTCCAACTTCTCTTAAGTTCATGTCATCCCCAATCCAAATACAGAAttggatgtctttttttttaaaagacgtGTCTGACTTTCATGTAGTAGGTCATGAACACTGTGATGTCTGAGACACTTCtgttaatgttataaaaataagtTGTTTGTATTATCTGTCTTATTGATTCTGACATATTCAACTATCAATCAAATGTGCTGCTTTTTATGGACTGTTGTTACCTGAAAGTGTGTGGTTCACTTATACCTTAAAGGTTTAATCTGCTCATGATTCTTAAAGATTATGCTCTAGTACATCCGAGGGGTTAAGTGAGACTTGTGCCTGTTGGATTGGGTCACATTTTTAGCCCACTGTACACAGCATTAACAACTAATTCCTCTTTAAGTCAAAGCAGCCATAAATAACCAAACAGAACAGTTAGGTAACCTCCACATCTACTTTTAGAGTTTCTCTCTGTacgattttttttccccctgcagGTTGCTGGAAGGTTTGTTAAATTATATACAGGAGGTAATTAAGCACAGACAGATTGTGCCTGAATTATATACAGAGCTATCAAGCTCTAAACACAGCCTGTCATAAAATCTAATGGACTTACTGTGAACACAAGGCAATAGCAGCTGAAGGAACATGCAGCCTCGTAGTTGCACCAGAGACAGGCAGATTTACctacaacacaacaaaaaagccACACTGAAAAAGTCTGAAGGTGTCAACTGATGGAAAAGAAATTAACTGTACCTTACACTTCTTTTAAAGTGATGATTTAAAGATCATCAGTGGAGGCTTTTTACCATGAGCTAATCagattcatatttttataaatatatttataaattcgCAAATGAGATATTGCAAATATTATGGATTCTCCCAAACTAATCATTAAAGGAACTGCTACAGTTCAGAGGCATAAGATGTAAACTCTACTTCATGGGGAATGTAATGTAACAGGATTTCAATTCACGTTTATCATATTGCAACTCATAGATAATACCATGTAtgttaatatattcatattttatttttctttcaaatactGTATGTCTCAAAAACAATGGTTTCAAGTGCTTTTTCAGAGGGTgatactttgttttttttgtgttaattcaGTCCATTACTGTTGGAATGGACTGATTCTTAGCATAAAGTGTAGGACTGTATTTTGTTTCATATCAATCTGTGTACCTCTGTGTAAAGATGACCTGAAAGAGGCAGTACTATGTGTGTACAGATAGCGTCTCCCCATGTTACCAATTTACAGATTTGGCAGCGTTGGATCTTTTTCATACCAACAGCAGAAATGTTGATGCAGTGCATCTTTGATGTGAATAATCGATATTTATTGGACAGtggtgtgtatatttatttagataCTTTACTCGAAAGGGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU378748 False 305 lncRNA 0.43 2 13679496 13680102
XM_026925768.2 True 3501 mRNA 0.42 4 13665181 13680110

Neighbor

gene id symbol gene type direction distance location
capsla LOC108280735,LOC108439882,LOC107552688 coding downstream 4001 13658694 ~ 13661180 (-)
im:7138239 LOC108280258,LOC108439873 coding downstream 65497 13594607 ~ 13599684 (-)
admp LOC108280256,LOC108439880,LOC107754609,LOC107687929,LOC107596296,LOC107696672,LOC105906921,LOC107750936 coding downstream 72515 13589569 ~ 13592666 (-)
LOC113533394 LOC108280525 coding downstream 276344 13386391 ~ 13388837 (-)
LOC113533154 pde4dip coding downstream 288003 13306777 ~ 13377178 (-)
abhd8a abhd8a,LOC108280232,LOC108439870,LOC107696148,LOC107754588,LOC107687901,LOC107596234,LOC103352801 coding upstream 13293 13693403 ~ 13703418 (-)
LOC113533381 LOC108280169,LOC108439884,LOC100333521,LOC107696163 coding upstream 25190 13705300 ~ 13710697 (-)
napgb napg,LOC107750913,LOC107696142,LOC105907026,LOC107687900 coding upstream 127665 13807775 ~ 13819461 (-)
acss2l LOC108280639,LOC108442433,LOC107750908 coding upstream 229755 13909865 ~ 13931138 (-)
LOC113533496 celf5,LOC108280171,LOC108444550,LOC107750904,LOC107696073,LOC107667861 coding upstream 462093 14142203 ~ 14336583 (-)
G319766 NA non-coding downstream 35724 13629247 ~ 13629457 (-)
G319754 NA non-coding downstream 77650 13587091 ~ 13587531 (-)
G319674 NA non-coding downstream 236218 13428011 ~ 13428963 (-)
G319673 LOC108280701,LOC108433090,LOC105903982,LOC106600049,LOC107384124,LOC105020399 non-coding downstream 239229 13422351 ~ 13425952 (-)
G319606 NA non-coding downstream 356138 13305529 ~ 13309043 (-)
G319906 NA non-coding upstream 151745 13831855 ~ 13834798 (-)
G319974 NA non-coding upstream 260501 13940611 ~ 13945349 (-)
G319975 NA non-coding upstream 268198 13948308 ~ 13949723 (-)
G319995 rnf126,LOC107750906,LOC107569633,LOC107596227,LOC107754583 non-coding upstream 329799 14009909 ~ 14010528 (-)
G319999 NA non-coding upstream 332092 14012202 ~ 14012408 (-)
ccl25a NA other downstream 49438 13612516 ~ 13615743 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 737110 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 1959304 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 3136902 10527282 ~ 10528279 (-)
LOC113542985 crem,crema,LOC108439856,LOC100534480,LOC107659668,LOC107563815 other downstream 4691906 8969204 ~ 8973275 (-)
theg NA other upstream 1051624 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 1542668 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 2006972 15687082 ~ 15724356 (-)
G321462 NA other upstream 2677464 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 2884598 16564708 ~ 16587816 (-)

Expression


Co-expression Network