G320386


Basic Information

Item Value
gene id G320386
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14613999 ~ 14671669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379422
CGagtaattgatttttattaatctGCAGTAGTTAAAGacataaaaacttaaaaatacatatagaaaaatatttgatgtgtgcaatatttttaaGCCATACAATCAAAAGCTTTGGGAAAGTCAGTGTGCAGGCCACAGTATTAGACAGAACAACATTAAAACTCACCTGCTACAGACACTTGGCTTCATgcatccacaaacacacaaattcaGAGGCCTAATTAGAAATTAGTGGATAGAATTAAAACTTTATCCAGAGGATTCACTcacttaaaaaatatacatatatatataaactgtgcCATGACCATACATTATGTAAATACAGCTTTGGGatcagacagatacagacagatcGGTACACATTAGAAATATTTGTATTCGTTTCAGCCAGTTCATCCATTATTTATCCAGCATTTCTGATCTGAAGGTCACACTAACGGATCTTTTTCACCAGTGTTTATTcgtttgtatttcattttcactgtatCACTTGAAATGGTCAGGTTTAGGGGTTATCTTGGTCTTGGGTTTGGAGGTATTctcacattttaatgaaaatccCAAGGGCTTAGAAAAGAGATTACAAAATATACCAAAAACTGGTGTATTTTAGTACATATTAACTGAGAACTATAACTGAGAACTATAATGGGAATATCAGGGCTTGTGCAGGCAATagaacaatatatatattaaaaaaaagagattattCAAACATATTCAGTGATACTGCGCTGTTGCAAACTGTGTGAAAATGCAGGAATATGGTATGCATTTTGAATTTGTTCCACATTCAATttagtacacaaataaaataaaagatgctTTGCAGTAGGGAAGCTCTCCCCCGCATTGGGGCCTGCTCTATTTTAAGGCCTTTGGCTTTCAGCAGCTACACCAGAGGAACACAGTGAGGCTCTGTTTGTtggagaaaaagggaaaaaaatcaactcatGCTCAGTAAATATAGAGTGTATTAAAAATCTCGCAAACTAAGCAATGTTGCTGAAATGCACATCTCATAGTAGAGCTTGTTAGCATAAGTAATGTGCGTAatctgaatcagtgaatgtgAAACGACTTCACACGGAGTCATATTTCTGTAGACGGAATACATCATTGTGCAGCATATAGATCAATTTGCGATGTGAATAtattgtatgtaaaaaaaaattacagtaatttCATTATTAGTCATGTAAGAGTACAAAATGATACACAACTAATATTGAATACTTATTTTATACACGCAAACACTCATTTTTTGCACCATGGTTTTGCACAGGCTTAGAGAGCTACGACTTTGCTTAACAAGGTGAATGTCGTGTCCTAATCAGATGTGACTCCAATTTTTGACCCCAGTCTTGTGATTATGTGCTCTAATGCCCAACACGTGGTTCATATAAAAATGATGGCAATCACGTTCCAGGGAAAAGTTACTGGTATGAATTTTGTATCTAGGGCTAGATGAGATAGAGTTTACGTGCATAGACTGAGCACTGCCacgaagggggaaaaaaaatcatatgctatgaACATTAACAAATCCTAACCATGTGCCTTGGGCAGTTTTACAAGAGCTGAAGCTTTTTCTGCAGTGGGGATCTGTGCCAGACACACGTGAGATCTGTCATGAGGTCCACTCCCAAAGCATTCATACTAGAAATTTCTTGAACGCAACATCGCAGTACGTTACTAATCCAAATAAATTCTACTAGATTACACAAGATTACTGAAGACCAGTCTGTGCTGGCAGCAGTGAGGAAAAATGTTGCGTCCTTAAGCCTATTTTTCATCATCTtactcagttatttatttttttttacactttttaaaattacatctGTCCGTTATGAGATTATATGAACTCCTCTTGTCCCTAAATTcacataaacaatacaaaaaaaagcagtaggAAAAAGTTATAAGCTTGCAATATGCATTAGTTAGCTAGTGGTATTGGTGAAGTTAGATAAtatcatataatttttttaaaaaaatgtaaaaattagtCACATTATGCAGTCCACCTTGTGAATGTGATGgggatttttatatataagacACTACTGCCATTCACCAGGAGGGTCATAACTATAATCAACCACCACAGGATATACTTTCATTAAAAACGTCTTAaaactatgtttaaaaaaaaaaaaacggcaacTTGGCGTTACTCGTCACAATGCAGTGGATGAGGAACACATCTGAACTCTATCTCACACATTTTCAGTGGCACGGCTTCTTGAAATTCAACGGACCGACCCACGACCTTCCCCCACTTCACTCCTGAACTGATTTCTAACTCTTCAAATCACATGAAGTCGTTGCATTTTGATACAATTTAATTCTATTCATTGGAATCAAAAATATCAATTGATTGTATTTTGATTTGAGGATCATGTGCTTTAGAcctaaaaaaatgatttatgtaatcagtataaagtataaatacatcAGACTCTCTACAGAAAGGACAAAATATAGGGATACTATATGAtgccgtacacacacacacacacacacacacacacacacgcacaggCATATAAAGGAGAGATTATCCACGTGTGGAGGCGAGTCTGTAGTCAGTGCCACTCAGCTTTAGTGGCTACAGTAGCTGCACTGATGCCTCTGGGATGCAGATGTGGGGGAATTAGTGAGCAGCATTGCAGCCTGTCCAGtggttatatatatttatatacactttCTGGGTTTGGTGTGATGACAGTACACTGAAAGTCTCTCATACAGTCCCAGTAAAGCTGCAATGGTGATTCCTCTCTTGCTCGACTATCTGCAGGCTTGGTTTGTGCTCCGATTCGTCGGTCTCCGACATCTCGGGGTGCCGTTGGCGCGGAAGACGTTCCTTGAAAAAATCTGAGACGTATCGCA
>TU379424
cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacaggCATATAAAGGAGAGATTATCCACGTGTGGAGGCGAGTCTGTAGTCAGTGCCACTCAGCTTTAGTGGCTACAGTAGCTGCACTGATGCCTCTGGGATGCAGATGTGGGGGAATTAGTGAGCAGCATTGCAGCCTGTCCAGtggttatatatatttatatacactttCTGGGTTTGGTGTGATGACAGTACACTGAAAGTCTCTCATACAGTCCCAGTAAAGCTGCAATGGTGATTCCTCTCTTGCTCGACTATCTGCAGGCTTGGTTTGTGCTCCGATTCGTCGGTCTCCGACATCTCGGGGTGCCGTTGGCGCGGAAGACGTTCCTTGAAAAAATCTGAGACGTATCGCA
>TU379425
CGagtaattgatttttattaatctGCAGTAGTTAAAGacataaaaacttaaaaatacatatagaaaaatatttgatgtgtgcaatatttttaaGCCATACAATCAAAAGCTTTGGGAAAGTCAGTGTGCAGGCCACAGTATTAGACAGAACAACATTAAAACTCACCTGCTACAGACACTTGGCTTCATgcatccacaaacacacaaattcaGAGGCCTAATTAGAAATTAGTGGATAGAATTAAAACTTTATCCAGAGGATTCACTcacttaaaaaatatacatatatatataaactgtgcCATGACCATACATTATGTAAATACAGCTTTGGGatcagacagatacagacagatcGGTACACATTAGAAATATTTGTATTCGTTTCAGCCAGTTCATCCATTATTTATCCAGCATTTCTGATCTGAAGGTCACACTAACGGATCTTTTTCACCAGTGTTTATTcgtttgtatttcattttcactgtatCACTTGAAATGGTCAGGTTTAGGGGTTATCTTGGTCTTGGGTTTGGAGGTATTctcacattttaatgaaaatccCAAGGGCTTAGAAAAGAGATTACAAAATATACCAAAAACTGGTGTATTTTAGTACATATTAACTGAGAACTATAACTGAGAACTATAATGGGAATATCAGGGCTTGTGCAGGCAATagaacaatatatatattaaaaaaaagagattattCAAACATATTCAGTGATACTGCGCTGTTGCAAACTGTGTGAAAATGCAGGAATATGGTATGCATTTTGAATTTGTTCCACATTCAATttagtacacaaataaaataaaagatgctTTGCAGTAGGGAAGCTCTCCCCCGCATTGGGGCCTGCTCTATTTTAAGGCCTTTGGCTTTCAGCAGCTACACCAGAGGAACACAGTGAGGCTCTGTTTGTtggagaaaaagggaaaaaaatcaactcatGCTCAGTAAATATAGAGTGTATTAAAAATCTCGCAAACTAAGCAATGTTGCTGAAATGCACATCTCATAGTAGAGCTTGTTAGCATAAGTAATGTGCGTAatctgaatcagtgaatgtgAAACGACTTCACACGGAGTCATATTTCTGTAGACGGAATACATCATTGTGCAGCATATAGATCAATTTGCGATGTGAATAtattgtatgtaaaaaaaaattacagtaatttCATTATTAGTCATGTAAGAGTACAAAATGATACACAACTAATATTGAATACTTATTTTATACACGCAAACACTCATTTTTTGCACCATGGTTTTGCACAGGCTTAGAGAGCTACGACTTTGCTTAACAAGGTGAATGTCGTGTCCTAATCAGATGTGACTCCAATTTTTGACCCCAGTCTTGTGATTATGTGCTCTAATGCCCAACACGTGGTTCATATAAAAATGATGGCAATCACGTTCCAGGGAAAAGTTACTGGTATGAATTTTGTATCTAGGGCTAGATGAGATAGAGTTTACGTGCATAGACTGAGCACTGCCacgaagggggaaaaaaaatcatatgctatgaACATTAACAAATCCTAACCATGTGCCTTGGGCAGTTTTACAAGAGCTGAAGCTTTTTCTGCAGTGGGGATCTGTGCCAGACACACGTGAGATCTGTCATGAGGTCCACTCCCAAAGCATTCATACTAGAAATTTCTTGAACGCAACATCGCAGTACGTTACTAATCCAAATAAATTCTACTAGATTACACAAGATTACTGAAGACCAGTCTGTGCTGGCAGCAGTGAGGAAAAATGTTGCGTCCTTAAGCCTATTTTTCATCATCTtactcagttatttatttttttttacactttttaaaattacatctGTCCGTTATGAGATTATATGAACTCCTCTTGTCCCTAAATTcacataaacaatacaaaaaaaagcagtaggAAAAAGTTATAAGCTTGCAATATGCATTAGTTAGCTAGTGGTATTGGTGAAGTTAGATAAtatcatataatttttttaaaaaaatgtaaaaattagtCACATTATGCAGTCCACCTTGTGAATGTGATGgggatttttatatataagacACTACTGCCATTCACCAGGAGGGTCATAACTATAATCAACCACCACAGGATATACTTTCATTAAAAACGTCTTAaaactatgtttaaaaaaaaaaaaacggcaacTTGGCGTTACTCGTCACAATGCAGTGGATGAGGAACACATCTGAACTCTATCTCACACATTTTCAGTGGCACGGCTTCTTGAAATTCAACGGACCGACCCACGACCTTCCCCCACTTCACTCCTGAACTGATTTCTAACTCTTCAAATCACATGAAGTCGTTGCATTTTGATACAATTTAATTCTATTCATTGGAATCAAAAATATCAATTGATTGTATTTTGATTTGAGGATCATGTGCTTTAGAcctaaaaaaatgatttatgtaatcagtataaagtataaatacatcAGACTCTCTACAGAAAGGACAAAATATAGGGATACTATATGAtgccgtacacacacacacacacacacacacacacgcacaggCATATAAAGGAGAGATTATCCACGTGTGGAGGCGAGTCTGTAGTCAGTGCCACTCAGCTTTAGTGGCTACAGTAGCTGCACTGATGCCTCTGGGATGCAGATGTGGGGGAATTAGTGAGCAGCATTGCAGCCTGTCCAGtggttatatatatttatatacactttCTGGGTTTGGTGTGATGACAGTACACTGAAAGTCTCTCATACAGTCCCAGTAAAGCTGCAATGGTGATTCCTCTCTTGCTCGACTATCTGCAGGCTTGGTTTGTGCTCCGATTCGTCGGTCTCCGACATCTCGGGGTGCCGTTGGCGCGGAAGACGTTCCTTGAAAAAATCTGAGACGTATCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU379422 True 2901 lncRNA 0.37 2 14668721 14671669
TU379424 False 426 lncRNA 0.50 2 14613999 14671669
TU379425 False 2897 lncRNA 0.37 2 14668721 14671669

Neighbor

gene id symbol gene type direction distance location
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding upstream 19678 14550309 ~ 14594321 (+)
LOC113533212 LOC108280212,LOC108427118,LOC568754,LOC107558277,LOC107667866,LOC107729992,LOC107600185,LOC107750900,LOC107696035 coding upstream 126616 14481676 ~ 14487383 (+)
ralbp1 ralbp1,LOC107696059,LOC107667860 coding upstream 163560 14438363 ~ 14450439 (+)
sirt6 sirt6,LOC107667852 coding upstream 241806 14344594 ~ 14372193 (+)
rnf126 rnf126,LOC107569633,LOC107754583,LOC107596227,LOC107750906,LOC105909243 coding upstream 598628 14006357 ~ 14015371 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding downstream 106553 14778222 ~ 14804806 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding downstream 446824 15118493 ~ 15139852 (+)
LOC113533638 apcdd1,LOC108280926 coding downstream 504106 15175775 ~ 15191239 (+)
ncstn ncstn coding downstream 559878 15231547 ~ 15240528 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding downstream 570360 15242029 ~ 15248003 (+)
G320371 NA non-coding upstream 53386 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 154990 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 157542 14455383 ~ 14456457 (+)
G320210 NA non-coding upstream 160048 14438716 ~ 14453951 (+)
LOC117595736 NA non-coding upstream 187701 14404979 ~ 14426298 (+)
G320797 LOC108280451 non-coding downstream 552202 15223871 ~ 15226072 (+)
G320843 NA non-coding downstream 638935 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 668897 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 790185 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 872228 15543897 ~ 15546092 (+)
rab31 rab31 other upstream 147246 14386238 ~ 14466753 (+)
zmp:0000000521 zmp:0000000521,LOC108280721,LOC107696078,LOC108442439,LOC107596226,LOC105888700 other upstream 486987 14080249 ~ 14127012 (+)
LOC113533270 mtcl1 other upstream 716085 13837433 ~ 13897914 (+)
sema6ba si:ch211-168n16.1,LOC108280795,LOC108433102,LOC107713651,LOC107600229,LOC107757803,LOC107662975,LOC107698499,LOC105903857 other upstream 1459472 13021142 ~ 13154527 (+)
G319170 NA other upstream 1810980 12765055 ~ 12803019 (+)
ly97.3 LOC108280687 other downstream 155573 14827242 ~ 14828778 (+)
LOC113533366 NA other downstream 392052 15063721 ~ 15066371 (+)
LOC113533365 LOC108280254 other downstream 410569 15082238 ~ 15101461 (+)
fcer1gl LOC100304589 other downstream 577846 15249515 ~ 15253555 (+)
si:dkeyp-68b7.7 LOC108280928 other downstream 627392 15299061 ~ 15303288 (+)

Expression


Co-expression Network