G320640


Basic Information

Item Value
gene id G320640
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 14571684 ~ 14659943 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379728
taaaagtaaaaaaaaaaaaaatcaaacaaaaaaaaaaaggagtctaGTCATGCAGAGTACGGTACCAGCAGCTGGAAaaaattagggaaaaaaaacccgtGAACAAGGAAAGGCGCAAGCAGTTTCTATGTAAAAATCCTTAAAATAAACATGGGAAAGAAGTAATGGAACATCTTAACCTGTGTGAAAACTGGCAAAACAATACCTACTGAGTCAATATCTGTACTACACACTGATAAATCCTGATAATCCTTAAAATTTGCAATTTCTTACCCATCTTTGATTGAAATGCTGTTATACGTCACGTGATAACAGCAGTAGCTATAGTAACCtatcattaaaacatttttaaatgatcatctGAGCAATGTACACTGATTGATTTGCATCACCACAACCTCTCGTTCTCATTCTGGCGTTACATCTGATTACAATGCTCACAAAGTTTACATTCATGGATGCGAGGTGAAGACTGGCCTCGCACCACCCGTGGAACCTGCTGGAAAACCCTTTGGATTCTTGACTCCTCTGAAAACATGTAATGGAGCCATTCACAGCTTCTAGCACCACAGCGCTTGTCCTTGTGTCCGTGTGTAAATAAGATGAGACTTTCTTCTTGAAAACTTTCCCCCCCCGACTGGCAGGATGaaaaagccggaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU379728 True 680 lncRNA 0.38 3 14571684 14659943

Neighbor

gene id symbol gene type direction distance location
creb3l3b creb3l3 coding downstream 142591 14408452 ~ 14429093 (-)
rxfp3.2a LOC108280335,LOC107729970,LOC107558276,LOC107667854,LOC107600262,LOC107696777,LOC107750939 coding downstream 166861 14401929 ~ 14404823 (-)
LOC113533496 celf5,LOC108280171,LOC108444550,LOC107750904,LOC107696073,LOC107667861 coding downstream 235101 14142203 ~ 14336583 (-)
acss2l LOC108280639,LOC108442433,LOC107750908 coding downstream 640546 13909865 ~ 13931138 (-)
napgb napg,LOC107750913,LOC107696142,LOC105907026,LOC107687900 coding downstream 752223 13807775 ~ 13819461 (-)
plpp2a plpp2,LOC108427214,LOC107558288,LOC107729984,LOC107713693,LOC107667850 coding upstream 11329 14671272 ~ 14705998 (-)
LOC113533171 NA coding upstream 49179 14709122 ~ 14725998 (-)
shda shd coding upstream 88985 14748928 ~ 14764816 (-)
yju2 ccdc94,LOC107600192 coding upstream 106147 14766090 ~ 14772267 (-)
LOC113533545 LOC108280686,LOC108427208,LOC107713688,LOC107600193,LOC100331938,LOC107558294,LOC107729982 coding upstream 148024 14807967 ~ 14818873 (-)
G320317 NA non-coding downstream 120661 14361947 ~ 14451023 (-)
G320332 NA non-coding downstream 175771 14391988 ~ 14395913 (-)
G320294 NA non-coding downstream 253359 14318057 ~ 14318325 (-)
G320293 NA non-coding downstream 253647 14317692 ~ 14318037 (-)
G320291 NA non-coding downstream 257359 14314000 ~ 14314325 (-)
G320767 NA non-coding upstream 404183 15064126 ~ 15065780 (-)
LOC113533367 NA non-coding upstream 435734 15095677 ~ 15104463 (-)
G320864 NA non-coding upstream 621492 15281435 ~ 15281638 (-)
G320867 NA non-coding upstream 622417 15282360 ~ 15282740 (-)
G320868 NA non-coding upstream 623692 15283635 ~ 15284425 (-)
LOC113533556 LOC108280202 other downstream 891574 13665181 ~ 13680110 (-)
ccl25a NA other downstream 955941 13612516 ~ 13615743 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 1643613 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 2865807 11619876 ~ 11705877 (-)
ccl20a.3 LOC108261059 other downstream 4043405 10527282 ~ 10528279 (-)
theg NA other upstream 71791 14731734 ~ 14745487 (-)
LOC113533479 LOC108280451 other upstream 562835 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 1027139 15687082 ~ 15724356 (-)
G321462 NA other upstream 1697631 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 1904765 16564708 ~ 16587816 (-)

Expression


Co-expression Network