G320767


Basic Information

Item Value
gene id G320767
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15064126 ~ 15065780 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379867
TGCAATaccatttatttacataaaagatTTACATTATGTTTCTGACTGATGACCATATGACCATACACAAATGCTCTTATCCTAAATATGCTATGTTTTCTAAATAGTGTACTACAGATATTGTTAGATTGAGTTTTATACTTAAGATCTGCTGTgctgttatgttatgttatgttaacAATCTCAGAGATGCAGTGATCATAAAGAAACACAAGAAGAGACATACAGGGGTAGATGGTGAATCGAGCAGAGATACAGGCGTCTTTTTTATAGCCGCAGGTTTCAATGGTGGTAGTACATTTGCCACCATTAAGTGGAACACAGTTGTTGCATTTCAGAGCAGAACCTTTAACAGAGTGGAGACCAAAAATCAGCATCAAGGCAAGAACCAGAGTCAGGAACAGAGTCTTCATTATTCTGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU379867 True 423 lncRNA 0.37 2 15064126 15065780

Neighbor

gene id symbol gene type direction distance location
LOC113533544 NA coding downstream 19042 15042706 ~ 15045084 (-)
LOC113533549 LOC108280688,LOC108427207 coding downstream 28145 14834902 ~ 15035981 (-)
LOC113533545 LOC108280686,LOC108427208,LOC107713688,LOC107600193,LOC100331938,LOC107558294,LOC107729982 coding downstream 245253 14807967 ~ 14818873 (-)
yju2 ccdc94,LOC107600192 coding downstream 291859 14766090 ~ 14772267 (-)
shda shd coding downstream 299310 14748928 ~ 14764816 (-)
vapal vapal,LOC108280766,LOC108427204,LOC107750204,LOC108432761,LOC107683769,LOC107684566 coding upstream 126461 15192241 ~ 15213022 (-)
LOC113533134 LOC108280453 coding upstream 150948 15216728 ~ 15220876 (-)
LOC113533136 LOC108280455 coding upstream 203379 15269159 ~ 15272159 (-)
si:ch211-155e24.3 LOC108280454,LOC108232831,LOC103367105,LOC107383477 coding upstream 209141 15274921 ~ 15279966 (-)
LOC113533213 LOC108280248 coding upstream 238498 15304278 ~ 15306780 (-)
G320640 NA non-coding downstream 404183 14571684 ~ 14659943 (-)
G320635 NA non-coding downstream 431955 14627785 ~ 14632171 (-)
G320317 NA non-coding downstream 613103 14361947 ~ 14451023 (-)
G320332 NA non-coding downstream 668213 14391988 ~ 14395913 (-)
G320294 NA non-coding downstream 745801 14318057 ~ 14318325 (-)
LOC113533367 NA non-coding upstream 29897 15095677 ~ 15104463 (-)
G320864 NA non-coding upstream 215655 15281435 ~ 15281638 (-)
G320867 NA non-coding upstream 216580 15282360 ~ 15282740 (-)
G320868 NA non-coding upstream 217855 15283635 ~ 15284425 (-)
G320870 NA non-coding upstream 219858 15285638 ~ 15285941 (-)
theg NA other downstream 318639 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 1384016 13665181 ~ 13680110 (-)
ccl25a NA other downstream 1448383 13612516 ~ 13615743 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 2136055 12908453 ~ 12928071 (-)
wu:fb63a08 LOC108280878 other downstream 3358249 11619876 ~ 11705877 (-)
LOC113533479 LOC108280451 other upstream 156998 15222778 ~ 15231580 (-)
LOC113533563 NA other upstream 621302 15687082 ~ 15724356 (-)
G321462 NA other upstream 1291794 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 1498928 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 1907747 16973527 ~ 16973770 (-)

Expression


Co-expression Network