G320797 (LOC108280451)


Basic Information

Item Value
gene id G320797
gene name LOC108280451
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15223871 ~ 15226072 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379908
TTTATCaagcaaaatgaaacaaacatttatacattagCAATTCATGATTTAATAGAGTCTGCAGAGAAACAATTACAATGATGCCCAGTTTTGTTCTCAGTTTCTAGCTTTCCAGTGATGAAAAATACACACCATGAAACATATGATTACAGTACCAAAAGGACATATACTGTATTCCTGCCCAGTCCTGACAATTAGCTATAAATCCTATTCCTAATGGACGAAATCTCTCTCTACACTAAATTCCCCCAAAAATGAAGGCGTTAAATGGGTTTGGCTGCTACGACCTGACAGCACGTTTAATGAAAAGGGAGAGTACACGTTCTGCAGCCCAATCTAATGATAAATACAGTTACATGTGCATAATTATTATGGTTTTTATAAAGAGAAagcacaaaatataatataccaACATCGAAGCCAATGGATGTTCCATGCCATCCCAGTTTTATCTGGGGACTAAAATGCCACTGCTTTAACCCACTGATTTTTAAAGCCCTGAAAACACCAACCTCCACCTTGGCTCCCAATATCCACAGAAAATGAACTCTGCCTATGAACGAATGACGAATGGACATTTGATTTGATACCGCTTACACTGCATACGCTTCCTCTTCGTATTGCCTGATTGAGTATAGTTCTCATATTTTCTGCCAAGAAATAGGCAAGAAATGTGTATCTCCAGGGCTAGTCAGGGCACGTTGAGCTTATAAATGCTTGGTTAAGGCAAGTTTGTGACATGCTTGTCCATAATGATACGTTTTGCAGTCTGATGCTGTTGTCTGTAATCATGATTTTTACATCAGTGTAACAACTTCAGGGATATAACTGGCATCAGACAGCAGCACATTCTTTTTGGATTTGTATCGCAACACCAGCCTTTCACCTtaacagtaaacacaaaatcttttaaaattggTCCTTGTGGTAAAGTCATTgttaaaatgtgtcattttaaaattgttgtaAACTTTAAAATTTGTCCTTGATGTAGCGTTTCCCAAAAAATAGAAATACTTTGTGTAACCCTTGAATGCAGGGTTGACGGTTTGCACACAATTAATAACAGAAATGTAATTCATTGTACAGTAAATGTGGTCTACTACAGAGAAAAACAGCTGTATCAATGTACATAAATACGTACAAAGCTGATGAGTTATAAGAATCTTCCTAAAAGCATTTTTCCAGCAAAGTCTGCACTGTTTAGTTCATACAGCAGGAACTTTGAGATTAGCTGTAAGACACAGGTTGTGGTTAGTTACATTGGTGCCGGTAGCGACTGGCTCGTGTGGGGAAGCTCATGCCACACAGAGAGCAGCTGAAGCCACGCTCACCCGTGTGCGTTCGCATATGACCCTTCAGGCTGCTTTTCTGCGTGAAGCTCCTGCCACATGTCCCACAGCTGAAGGGCTTCTCTCCGGTATGCACGCGCTGATGCCGGTCCAGGTGGCTCAGACGGTCGAAACTCTTACCACAGAGAACGCACAGGAAGCGCCTCTCACGTCCATTCAAAATACGCCGCCTCCGAGGTAATGTGTCGTATGGAAAATCAGGCACCGCTGCAGTCTCTGTGGTCCTGAGACAGTCTGTGGTCGAGTTCTGATCTAAAGGTGACGCTGTGTTCGGGTCATAGGGCGCCTCTGGATTCAGATTGGACTCTTCTTCATCCAAGCAGGACgcatcctcttcctcctctttcacATGAATTTGGTTCACAGCAACACTTTTGGCCTTGGAGACCCCCCACGTGTGTAGGACTGTCGAGGTAGATTCTAACCGGCGTTGGTTTTGAGCTGAGGTTTGCTCGGTTATGCTAACGCAGTCAGACTCCATTGAGTCTTTCCTGAAACTTGAGTGTGCCTGAGCATCTTCCTCGTCCAGGACACTCTCAGATCCAGAGTGCCTAGGCTCGTCCAGCCGACAATCGGATAACACCTgatcttcatcctcctcctcttcctccccaTTCTTCTCATATAGCTCAGGTAGATCAGCTGGCTTCTTAGTTTGTCCTGCAGGGAAATTTCTAATCTTCTGATCTCCGTACGCTTGGTGCATGCTCTCTTCATCTGCGTTTATGAAGTGAGCTCCTTCTTGGCTCAGGTAGGACGAGTGTGAATTCGGTTCTTCTGTGTTTTGGTCAAAGTTGTGTGTGATCTGTTCTTCACAGTGAGTCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU379908 True 2180 lncRNA 0.43 2 15223871 15226072

Neighbor

gene id symbol gene type direction distance location
LOC113533638 apcdd1,LOC108280926 coding upstream 32632 15175775 ~ 15191239 (+)
LOC113533364 epb41l3,LOC108280699,LOC108427206 coding upstream 84019 15118493 ~ 15139852 (+)
scn12aa scn12aa,LOC100304599,LOC108427209,LOC107655859,LOC107713684,LOC107558292 coding upstream 419065 14778222 ~ 14804806 (+)
chico chico,aes,LOC108280588,LOC108427216,LOC107558286,LOC107667856,LOC106574496 coding upstream 595022 14602769 ~ 14628849 (+)
gna11b gna11b,LOC103033252,LOC108280682,LOC108427217,LOC105889474,LOC107600186,LOC107667855,LOC107696027,LOC107558284 coding upstream 629550 14550309 ~ 14594321 (+)
ncstn ncstn coding downstream 5475 15231547 ~ 15240528 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding downstream 15957 15242029 ~ 15248003 (+)
nectin4b LOC108280452 coding downstream 29118 15255190 ~ 15268619 (+)
si:dkeyp-68b7.12 arhgap30 coding downstream 55169 15281241 ~ 15292624 (+)
si:dkeyp-68b7.5 LOC108280921 coding downstream 66703 15292775 ~ 15297536 (+)
G320386 NA non-coding upstream 552202 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 663258 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 764862 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 767414 14455383 ~ 14456457 (+)
G320210 NA non-coding upstream 769920 14438716 ~ 14453951 (+)
G320843 NA non-coding downstream 84532 15310604 ~ 15310809 (+)
G320848 NA non-coding downstream 114494 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 235782 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 317825 15543897 ~ 15546092 (+)
G320977 NA non-coding downstream 344622 15570694 ~ 15571089 (+)
LOC113533365 LOC108280254 other upstream 122410 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 157500 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 395093 14827242 ~ 14828778 (+)
tle2c zgc:136336,LOC108280589,LOC108427215 other upstream 557363 14637781 ~ 14666508 (+)
rab31 rab31 other upstream 757118 14386238 ~ 14466753 (+)
fcer1gl LOC100304589 other downstream 23443 15249515 ~ 15253555 (+)
si:dkeyp-68b7.7 LOC108280928 other downstream 72989 15299061 ~ 15303288 (+)
LOC113533167 NA other downstream 340482 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 399730 15625802 ~ 15682276 (+)
G321088 NA other downstream 642944 15869016 ~ 15870995 (+)

Expression


Co-expression Network