G320843


Basic Information

Item Value
gene id G320843
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15310604 ~ 15310809 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU379974
AGGAAGTTTGATGgcctgggcaatgttctgctgggaaactttgggtcctggcattcatgtggatgttacatgtaccacctacctaaacattgttgcagaccaagtacacctcttcacggcgacagtattccctaatggcagtggcctctttcagcaggataatgagccctgccacactgcaaaaattgttcaggaatggtttgagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU379974 True 206 lncRNA 0.48 1 15310604 15310809

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-68b7.5 LOC108280921 coding upstream 13068 15292775 ~ 15297536 (+)
si:dkeyp-68b7.12 arhgap30 coding upstream 17980 15281241 ~ 15292624 (+)
nectin4b LOC108280452 coding upstream 41985 15255190 ~ 15268619 (+)
si:dkey-10o6.2 LOC108280456,LOC108280457,LOC107746564,LOC107656853,LOC107715131,LOC107656841 coding upstream 62601 15242029 ~ 15248003 (+)
ncstn ncstn coding upstream 70076 15231547 ~ 15240528 (+)
LOC113533560 isyna1,LOC107671814,LOC107549817,LOC107696502 coding downstream 3056 15313865 ~ 15320984 (+)
tpgs1 tpgs1 coding downstream 10652 15321461 ~ 15326058 (+)
sf3a2 sf3a2 coding downstream 21893 15332702 ~ 15337978 (+)
LOC113533554 LOC108280165,LOC108427150,LOC107724989,LOC107549819,LOC107552683,LOC107671817,LOC107696585 coding downstream 101929 15412738 ~ 15460090 (+)
pias4b LOC108280250 coding downstream 192824 15503633 ~ 15511913 (+)
G320797 LOC108280451 non-coding upstream 84532 15223871 ~ 15226072 (+)
G320386 NA non-coding upstream 638935 14613999 ~ 14671669 (+)
G320371 NA non-coding upstream 749991 14549223 ~ 14560613 (+)
G320212 NA non-coding upstream 851595 14458672 ~ 14459009 (+)
G320211 NA non-coding upstream 854147 14455383 ~ 14456457 (+)
G320848 NA non-coding downstream 29757 15340566 ~ 15341207 (+)
G320935 NA non-coding downstream 151045 15461854 ~ 15463232 (+)
G320949 NA non-coding downstream 233088 15543897 ~ 15546092 (+)
G320977 NA non-coding downstream 259885 15570694 ~ 15571089 (+)
G320981 NA non-coding downstream 285215 15596024 ~ 15596226 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 7316 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 57049 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 209143 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 244233 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 481826 14827242 ~ 14828778 (+)
LOC113533167 NA other downstream 255745 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 314993 15625802 ~ 15682276 (+)
G321088 NA other downstream 558207 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 619138 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 789724 16100533 ~ 16111089 (+)

Expression


Co-expression Network