G320897


Basic Information

Item Value
gene id G320897
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15380135 ~ 15460416 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380032
CCACGGTGTACAACATGCTTTTATGAAtgcagtgtgtttttctttttgtaagaCAAACTGTAGAAAACACATATATGCTTAGAAAACACATTATTCGAGACTGGACTGAGCTGCCGTGGGGTTGGATGAAGTAGATGTACAGATAAAACCATGATCTGTCCAAaggctcaaacacacacacacaaacacacacacacacacacacgaatgaCATCTATGTATAACATGTGAATGTGTCACTCTTTAGTGTACATATAGCACTGGCGTAACACATTTCAATGTCTCGTCTACATGTCAGCAATCtgtggcactgtgtgtgtgactcctttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380032 True 332 lncRNA 0.40 2 15380135 15460416

Neighbor

gene id symbol gene type direction distance location
LOC113533539 LOC108280326 coding downstream 30629 15338737 ~ 15349506 (-)
plekhj1 plekhj1,LOC107696566,LOC107750216,LOC107671816 coding downstream 47474 15329012 ~ 15332661 (-)
LOC113533213 LOC108280248 coding downstream 73355 15304278 ~ 15306780 (-)
si:ch211-155e24.3 LOC108280454,LOC108232831,LOC103367105,LOC107383477 coding downstream 100169 15274921 ~ 15279966 (-)
LOC113533136 LOC108280455 coding downstream 107976 15269159 ~ 15272159 (-)
onecut3b onecut3,LOC107724988,LOC107549809,LOC105906914,LOC107696512,LOC107552684,LOC105011560 coding upstream 3200 15463616 ~ 15489260 (-)
LOC113533480 LOC108280289,LOC108427160,LOC107724981,LOC108239455,LOC106526424,LOC106923029 coding upstream 134019 15594435 ~ 15648744 (-)
zgc:85843 tm6sf2 coding upstream 394087 15854503 ~ 15861482 (-)
polr2ea polr2e,polr2eb,LOC107669821,LOC107599482 coding upstream 463805 15924221 ~ 15929067 (-)
LOC113533416 homer3,LOC108280570,LOC108427175,LOC107696283 coding upstream 581412 16041828 ~ 16068561 (-)
G320880 NA non-coding downstream 76110 15303811 ~ 15304025 (-)
G320871 NA non-coding downstream 93258 15286084 ~ 15286877 (-)
G320870 NA non-coding downstream 94194 15285638 ~ 15285941 (-)
G320868 NA non-coding downstream 95710 15283635 ~ 15284425 (-)
G320867 NA non-coding downstream 97395 15282360 ~ 15282740 (-)
G321032 NA non-coding upstream 131744 15592160 ~ 15592616 (-)
LOC117595737 NA non-coding upstream 350937 15811353 ~ 15827344 (-)
G321330 NA non-coding upstream 580465 16040881 ~ 16041741 (-)
G321347 NA non-coding upstream 589026 16049442 ~ 16049643 (-)
G321349 NA non-coding upstream 638452 16098868 ~ 16099238 (-)
LOC113533479 LOC108280451 other downstream 148555 15222778 ~ 15231580 (-)
theg NA other downstream 634648 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 1700025 13665181 ~ 13680110 (-)
ccl25a NA other downstream 1764392 13612516 ~ 13615743 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 2452064 12908453 ~ 12928071 (-)
LOC113533563 NA other upstream 226666 15687082 ~ 15724356 (-)
G321462 NA other upstream 897158 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 1104292 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 1513111 16973527 ~ 16973770 (-)
G322080 NA other upstream 2039649 17500065 ~ 17500832 (-)

Expression


Co-expression Network