G320949


Basic Information

Item Value
gene id G320949
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15543897 ~ 15546092 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380086
ttttttttttgttttgttttgtttttgttttttgacctGTAATAATGTTTCTTGGCACTGATATTCATCAGAAGTTTAGCTTTCTTAGGCTTCCTTGTTATCACATGTTCCTTCCTTCATACAGGATAAATCCTAAATAggtttgtgtgtattgtatatgcTCAATACATAGGGAACAACCGAGTgcagaggtggacaaatcataaattagCCTACTGGGCAAGTGAACGCTCCAGTGTGCTTACCCAAAACTGAACTGTTCTAAATGCAGTAGCTAACATCAGTCGAGTTTGGCGAgtctagttagctagttaatgtgttaattcagACTAAAGGAAACGAGTGAGGCTTCAGATTACCGAGGATGGGATCACTCTGCGTAGCCATAGTCGTTCTCCTGTTCTCATTATGTTTCTGATGCAGAATATCATGTTTGGGATTTTGGCCTAAATGGCAGCAAGTCTCTGGCTAACCTTTCCAACATTTTGAGGCTTCTGCTTTGTATGGATTTTGTGCTGCTTTGTGTGCTCCTGGTTCTGAAAAATTTGCCTGTCGTCTGTGCAAGTGAAATGATTAATCCGTCTAGTAAACTAAaatgtgcgtgtatgtgtgtagtgctgCGGGATTTGGAAACACACCTCTAGTTGCAGCATCGAGAAGCATCGCACCACCACGATGTGCATTCTGTTTAAATGTAACGTATCAGATGGAAACTTTTGTTTCAGGAAGTCAGTagggtttttttctctttggttatTTGTCAAGGGAAGACAAACGCAGGTAATCACTATATCAGCAGCCCCGTTTGAAGGTGGGGTAACtacagataaagaaagaaaaaaccctgATGGACTCGTAATCTGCTATTCCTGGGAACCGGGATACTGTTTTGTCTGTCCTGTATGCACTACGTGACCTATGACATGGCATGAGATTCAGTGACAGAAAATATGCGACCTCTCTGCATgtctgaaaatgatttaaatgtatcACCACTTAATTAAACTAAGTGAAAAAAGAGTGAAAGTAAAGTGTGCCGTGTGATATTAGAGCCTTTATCCTACCAAGATTAGGAACTGTGTAAGACTTGTAATAAGTAATTgacttataaaaaaaagtttgactcGGCAAGTGATGTTTTTAGTGTCTGTAGTGAACAAAGGAAGCATTTGCAGTCTAGATCTTTTTTCCAAAAGCTGTTAGATGTGTGTCTGATCTGATAAAACATCATCTGTTTTGGTATTATTCATAAACGTGTATGTCCTGTGGCTTTGTGGTTTTAGCCCtttgtgttcgtgtgtgtgtgttcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcataagcTACACTCATAGCCTATGACTCAGGGGTGACTAGACCCATTCCAACATTTTTCTTCGTAATTATAGCTCACTCTTTTTTGCGGGCTTACTGTGTGCCCTCTTCTCCCTGATGAGCTGTATGGATGTGTTGGTCTTGACTCACCCTCTGAGCTGTACCatgtgtgctcacacacacacacacacacacacacacacacacacacacacagtgtctcagTCGTGCCTGCAGGGCAGAGAGCGGCATAGAACTAAGGTTTCACGACTGGCAGCTTGCGTCTCTATTGTCCTCTGTAATCACTGTGTCTGCACAAACAGGTAGCGTGCGAGAGCACTTCGAGCCAATGAATGTCCAGACAATAATGACTCAGTGgctcataaaaaaaagaaaagggatgATAGATGCACAGGCGCAtgtacacacacgtgtacacgTCCACAAGGAACTGAGAATGTTGAGGAGGTTATAAAGTCGTGATTTCACCGTGCAGGTCTCTCATGTGACCCTGCACTCATGCCGACAGGATCAGCTGCAGCCATTAGGTTCTAACCAACAGTGGAAAAGTGcatgttggggttttttttattgagcCTTCAGAGCGAAGTTTTGTTTATTCAGGTGCTGGGGGAATGGCTCGTAACTTCTGGGCGCAGCTTTTTCCCCTAAAGACTGAAGTTTTCTGCACAAGAGCAGGGCGGTTTTTACACATTCGCCTCCCCATCTTCTATTAATCATCCTCCGTGTTAATAAGAGCGAATGTTCAGCATGCTTATGAATATGGATTAAAGCTATTTTTGAGAGTTTCTCTCATACACCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380086 True 2168 lncRNA 0.42 2 15543897 15546092

Neighbor

gene id symbol gene type direction distance location
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding upstream 22676 15514412 ~ 15521221 (+)
pias4b LOC108280250 coding upstream 31984 15503633 ~ 15511913 (+)
LOC113533554 LOC108280165,LOC108427150,LOC107724989,LOC107549819,LOC107552683,LOC107671817,LOC107696585 coding upstream 83807 15412738 ~ 15460090 (+)
sf3a2 sf3a2 coding upstream 205919 15332702 ~ 15337978 (+)
tpgs1 tpgs1 coding upstream 217839 15321461 ~ 15326058 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding downstream 25872 15571964 ~ 15578078 (+)
LOC113533252 mex3d,mex3b,LOC107736985 coding downstream 33929 15580021 ~ 15586283 (+)
LOC113533414 btbd2,LOC105905850,LOC108427161,LOC103376164 coding downstream 104529 15650621 ~ 15658676 (+)
armc6 armc6,LOC107696408,LOC107671809 coding downstream 113884 15659976 ~ 15666070 (+)
LOC113533481 LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990 coding downstream 252099 15798191 ~ 15842389 (+)
G320935 NA non-coding upstream 80665 15461854 ~ 15463232 (+)
G320848 NA non-coding upstream 202690 15340566 ~ 15341207 (+)
G320843 NA non-coding upstream 233088 15310604 ~ 15310809 (+)
G320797 LOC108280451 non-coding upstream 317825 15223871 ~ 15226072 (+)
G320386 NA non-coding upstream 872228 14613999 ~ 14671669 (+)
G320977 NA non-coding downstream 24602 15570694 ~ 15571089 (+)
G320981 NA non-coding downstream 49932 15596024 ~ 15596226 (+)
G320988 NA non-coding downstream 67102 15613194 ~ 15613541 (+)
G320991 LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480 non-coding downstream 69905 15615997 ~ 15616218 (+)
G320992 NA non-coding downstream 70819 15616911 ~ 15617123 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 240609 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 290342 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 442436 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 477526 15063721 ~ 15066371 (+)
ly97.3 LOC108280687 other upstream 715119 14827242 ~ 14828778 (+)
LOC113533167 NA other downstream 20462 15566554 ~ 15570478 (+)
slc25a42 slc25a42,LOC107696381 other downstream 79710 15625802 ~ 15682276 (+)
G321088 NA other downstream 322924 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 383855 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 554441 16100533 ~ 16111089 (+)

Expression


Co-expression Network