G320991 (LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480)


Basic Information

Item Value
gene id G320991
gene name LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15615997 ~ 15616218 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380130
TGTGATGCTGATCTTGGCTGACCATTTGGACGTGCCATCGAGAACGCTCTGCTTGATCTGCTTCATCTGGGTCCCATGGGTTGTCTTGGCCACGCCGAACACCTCCTGGATGAGCTCAAAGATCTCGGGTTTGTTGCGTTCACGGATCTTCATGCGGTCCTTCAGGACCATGATGATGTTCTGAGTGCGGTCCTCTGCACCGTGCTTAGAGCTCTTCTCAGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380130 True 222 lncRNA 0.54 1 15615997 15616218

Neighbor

gene id symbol gene type direction distance location
LOC113533252 mex3d,mex3b,LOC107736985 coding upstream 29714 15580021 ~ 15586283 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding upstream 37919 15571964 ~ 15578078 (+)
tcf3a LOC100304646 coding upstream 52212 15534922 ~ 15563785 (+)
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding upstream 94776 15514412 ~ 15521221 (+)
pias4b LOC108280250 coding upstream 104084 15503633 ~ 15511913 (+)
LOC113533414 btbd2,LOC105905850,LOC108427161,LOC103376164 coding downstream 34403 15650621 ~ 15658676 (+)
armc6 armc6,LOC107696408,LOC107671809 coding downstream 43758 15659976 ~ 15666070 (+)
LOC113533481 LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990 coding downstream 181973 15798191 ~ 15842389 (+)
sbno2a sbno2 coding downstream 246929 15863147 ~ 15890456 (+)
arhgap45a LOC108280537,LOC108427168 coding downstream 277783 15894001 ~ 15923289 (+)
G320988 NA non-coding upstream 2456 15613194 ~ 15613541 (+)
G320981 NA non-coding upstream 19771 15596024 ~ 15596226 (+)
G320977 NA non-coding upstream 44908 15570694 ~ 15571089 (+)
G320949 NA non-coding upstream 69905 15543897 ~ 15546092 (+)
G320935 NA non-coding upstream 152765 15461854 ~ 15463232 (+)
G320992 NA non-coding downstream 693 15616911 ~ 15617123 (+)
LOC117600003 NA non-coding downstream 66853 15683071 ~ 15704584 (+)
G321203 NA non-coding downstream 406268 16022486 ~ 16023068 (+)
G321214 NA non-coding downstream 425576 16041794 ~ 16043738 (+)
G321217 NA non-coding downstream 429928 16046146 ~ 16046482 (+)
LOC113533167 NA other upstream 45519 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 312709 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 362442 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 514536 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 549626 15063721 ~ 15066371 (+)
slc25a42 slc25a42,LOC107696381 other downstream 9584 15625802 ~ 15682276 (+)
G321088 NA other downstream 252798 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 313729 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 484315 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 495817 16112035 ~ 16120033 (+)

Expression


Co-expression Network