slc25a42 (slc25a42,LOC107696381)


Basic Information

Item Value
gene id slc25a42
gene name slc25a42,LOC107696381
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15625802 ~ 15682276 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380138
aggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaggggacacAGAGAGAGCTGACCAGCTGTGGGCAGTAACATGCAGGTTGGCTCTTATtgagagcactgtgtgtgtggtgttgtttcTCTATTGTCCTAAACATCTCTGTGCTTTAGTAGGTATGCCATGGTGCATATTAAGacgagtgtgtttgtgttggttgTGTAAATGATGTGGATGAGGATATACCAAGTGCCTACAGAGAGAGTAGACAGATGTACTATAACTGAAACACACTATCAGAAAAAAGGGACCTTTCTCTGTCGCATATCTTGTGTACCTTTATTATggatctttcacctggaaaagtggatatagtgtagctttaaaaatgatttaaggtacacAACTTGATATAGTTAGAGTAAAACTTGAAAGTGCACTACACGCACCTTTCTAGACATGTGTAAAAGATACATAGTAATGGTAAAAAGTGTGCATTCTTTAGGGTACCACCCCAGAGACAAGGAATAGTACAGTTGAGTACCCTTGTTTCTGATGCTTCATGCAGTTATACGTGTCCTATATCTTAATGCCAAGTGACCATGCGTGATAAAAGTGCAATAGGTAAGAGGTCATTCTCAGTAAACTGCATGATTTATTATCATCCACGTTTtagcagtttggtgttctgatGAATCATCTTCCAAGTAATCTTTGGGTATTTGATAACTCCTGAGGAAAgataaaggaatactccagtgttttgCAGTGTCTGTAGTGTACGTGTGATTACCATGAACTGGAATTTCAACACCTTTatctgaaaaaagaacaaaacccTGTTTTCCAATATCATTTCTATTCAAAGAACAGTTCATACAAAACACTTTAATCATTTCTTCAGTGAGATATATTTTTAAGTGAAGACCTTAGTCTTACTCGGTATGATTAGTGCTTTCAGATGGGActgctttttcatttctcattatGTAGATGTGATGGTGCTGTGTGTAACAGAAAAATGACGTTTCATCGTTCTGTATGTTTAGATAACGCTTCACAGGAACAGCTTTTGGTAACATGTTCTGTCATGTCTTCATCATCTTAACACAGTTATTGTTAAAGTGTAACAGTTGTGTTGAATTTGTGTTGTACACTTGCATTACAAGTGAGTTTTGACCGAACAGTtttactgttcttttttttctaaaggaaGATGTGTTAGATTTCTGTTCTGTGGTAGAGATGCATCGATTCCAATAACATGCTCAGTTCCTCGTCCTTGTAAAAATGCTCCGATACCCACATCTGATGTGAGCCTAGTGTACGTTGTCGCACTAATGAACAGAGAACACGAATTGACAGCAATATGAATGTAATTCGTGATTAATGACGGCAATGTAAAGCAGACTGTAAACTGTTCTCTGCAAAAACTGTCAGGAGGACACACTACAGtgtcttcctacaatacaagtaacctgataaagcATCTTtagtagagagagagtgaggccGGCCGCACTGAGCACGCACAGCGTTATCAGCAAACGAAAGGTGCTGtgaattgcacacacacacaaatctattGGCAAGCCTGGAGCAGGCGAAGTGAGTGAACAGCGaaactgtggtgtgtgtgagagagcacttctgttcagcgagcactgagcacttaCAACACTCATGCTTTGGGTCTACACTTCACtcgctcatttttaatgaccatgctCGCTGATACAGGTCTTCACACTCAGGTTacactctctattaaagatactggTTATATTTCATAAGATTTTAACATAAGACTCAGCACATGGAGCTCACAGCAGCAAATAACATAAAGacagctaaataaaatattccataatGCCATGAAGTAGGTTCCTCATTTCAGTATCAGGGTACTCTTACgcagtctttaaaaaaatggcattgATGCATCTCTAGCCTGTGGTAACTGCACATTTGCTGCAAATGCAATGAATATAGACTGTCTTTAAAAACagtgaagtattcctttaatattatTGACTATCGTCAAAGCTTTCTGATGGAGTGACCTGTAAAGTGTTAATACCTGCATTTACTTCCTAAAGTCTGACAGTTAGACGTTCTGCGCTGTTATTCAGTGGTGTTGAGTGTTGATGAAACGGTGTAATCGGACTATGTGCTGTATGAGCCGTGACCATTTTTTTATTCGCACAAATAATGTCAAACAAGGTcagatgaaattttaaaaagcgAACAAAATGACAACACTGTTTTCAAAATCTGGttatgttctctctctttttttgtttttgttttaaaatctcGTTACTTCAGCGTAAGAGTTTACTAACAGACAATCATTTGATGCCAAAGTATAGTTTGtgtgaatttgttttatttagcattttctgttttttttagcttgcAACTCAGTGAGGCCTAGAAACATTGACAGTGTTTGAAAATGGTCATTATATTATCAAAACTAATTAACCACATGGTTTCCTTACACATAGCAGGTACTCGAAACTCAAATGTCTTGTTAAATTTGAACTAACTGGACTAGAATATGTAACTTACAagctttaaatgaaatataaccTTGCCTCAGTGTAGAATAAACTCACTCGATGATATTCATCAGTGCGATGAAAGTTTTACTGTGTCAAGTGTCAGTGATTTTTGTCAATGCAAAATGGTTTAATCTCTTTAAAATGGCTCATTTTGTGGCATCTAAC
>XM_026925405.2
GTAATTACATAGCGATTTGGAATTGAGACAGGAGCGTCGATAGCTGCACACGAAAACAGCATGGACGGTGCACGGTAACGTAACTCAGTTACAGAGATAACGCAAGCGACTTTTGCGTGTTTGGATGTCGACTGCTGCGGTTTGTTTGAACTCAGAATGCGTAGTTTGCGTGACTGGACGTCAGTTGCGTGAAGCAGCGCTCGTGACGCTGACTAGCCGCCTGTTGGCTAAGTTGCTACAGGGTTTGTGTTGAGTTAACGTTAGCTGGCTAACCTCAAGGGGAGTGGTTGTCAAAGTGTCaccagtttattaaaaaaaagaaaagaaaagtcctGCACCTCGGTTTGGGAACAGAACAGGTGCAAAACAGAGgaaaagctgtttatttaatcaGAAAGTTGTTCAGCAAGTGTATGTGTGCAGCCTGCAAACCCCCCTGAGTGCTGGCGAGTGTGTATAGCGGGCTGGCATGGGGAATGGAGTACAGGAACATGGGGGGGCACTCACACAGGGTGAGGTGCTTCCACGGCCCtcctccagccaatcagagGGTTTTAAGCAGGGCCGGTCTGTGCTGAACTCATTGCTCTCTGGAGCCTTTGCAGGAGCTGTGGCGAAAACAGCTGTAGCTCCATTGGACAGGACCAAGATCATGTTCCAAGtgTCTTCAAACAGATTTTCTGCCAAGGAGGCGTACCGGTTGATTTATCGCACCTATCTGAAGGAAGGTTTCCTGAGCTTATGGAGAGGCAACTCAGCCACCATGGTGAGGGTCATCCCCTACGCTGCCATCCAGTTTTGTGCCCACGAACAATACAAGAGGCTTCTAGGAGGCTATTATGGCTTTCAGGGCAGTGCTCTGCCTCCTGTGCCGAGACTCCTGGCTGGCTCACTGGCAGGCACCACAGCCGCCATGCTCACATACCCGCTTGACATGGTGCGCGCCCGCATGGCAGTCACGCCCAAAGAAATGTACAGTAATataatgcatgtgtttgtgagGATCTCGCGTGAGGAAGGACTGAAGACCCTCTACAGGGGATTTACTCCAACAATACTGGGTGTGGTTCCTTACGCAGGCCTCAGCTTCTTCACTTATGAGACGCTTAAGAAACTCCATGCAGaggagACAGGACGAGCTCAGCCCTACTCGTATGAGCGGCTGGCGTTTGGTGCATGCGCCGGCCTCATCGGTCAGTCAGCTTCATACCCGCTGGATGTGGTGCGACGGCGCATGCAGACGGCAGGTGTGACGGGCCACACGTACAGCACCATCATGGGCACTATGCGGGAGATCGTGTCAGAGGAGGGTGTCATCCGCGGCCTGTACAAAGGCCTGAGCATGAACTGGGTCAAAGGGCCTATTGCTGTTGGCATCAGCttcatgacctttgacctcaccCAAATCCTGCTGCGCAAGGTGGGTGCACGATAGCCCATCACATTGGGGAAGACTTTTTAGGGGCAACACTATAACCAAGATGTCTGCCTGTATCCCTATATCTGAGGTGGCttggaaaggaaaaaacaggGTCTTCTTGCTGCTCGTGTCAGACccagagaggaggaagagtgGAAACCAGCGCACATGCTGCcagagaaaacaggaagtttATCAACTGACACACGAGCACAGAGATGGGACTTTTGTAGAAGTCTGTGGTTCCACATTTTGTAGGAATGTGAAGTGACATTTtagtgatttttgttttctgagtTGGAGAATCTCTTGGTAcacactatgtgtgtgtgagtgtgtgtgtgaaatagagAAATAGAGTTACAGACAGATTCAGAATGAATGTATGTCCTGTATGATCTCTCCTTTATACTGCCGTCTCACAAGTGTCCAAGTCCGGCAACCTCCAGGATGTCCTGTAAAAGTGCAATATGTTCATGCTAGAGCTGGGTGATATTCAAATTCTTACATCAATGTTATGTGTAtgacatgcatacatacacgtttatgaaaaattcatattttCTACAGTGTCATTCAGTTAAACCCTCTTGGTTgccagcagccaatcaggggATAGAAATGATAGGAGTAAGATCTTGATTGGTTAAGTATGTTAAGTAACCAATAAATAATAGAGATGAAGTGGGGCTTAGGGTTTAGGTCTTAAATGgctttttgtgtagttttttaaaaatgaattgaaaaagGCAAGCAGGTAAGGTAAGCACTTACCAGGAGAAAAAAACCcatcatatattcatatatcgCTCAGCTCTGCTTCATGCTTGAACATGAAACActctttctatatttttatagataCTTTCTGTATCTATATTATCTctcttctgtatttctgtatccCTGAAATTCTTTTTCCCGCCCCTCTGCCTTGTGATGTCTGATTCGTCAGAGCTGCCTTGAACAGAAACTAGCACATTTGTTCATCAGTGATGATATAAACCTGAAAGAGCATTTATTTAGTTTCCGCCGTATGAATTTGAGATGATCTCTTAGTAGTGAACCTATAAATTTTTATAGAGAAACAGCAATAAGGATGTAATGGAGCAGAACGGAGAGGTGTTATGGGGAAGTTTCGAGCGTCTCGCTTCTCTTACTCACTGTTGATGAATGGTGTCCGCTGCTTCTATCTTTATCCTGTGCAGTATGTGAGTATGTGGAGCCACTCACACCACAGAGGGCtgagagcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaggggacacAGAGAGAGCTGACCAGCTGTGGGCAGTAACATGCAGGTTGGCTCTTATtgagagcactgtgtgtgtggtgttgtttcTCTATTGTCCTAAACATCTCTGTGCTTTAGTAGGTATGCCATGGTGCATATTAAGacgagtgtgtttgtgttggttgTGTAAATGATGTGGATGAGGATATACCAAGTGCCTACAGAGAGAGTAGACAGATGTACTATAACTGAAACACACTATCAGAAAAAAGGGACCTTTCTCTGTCGCATATCTTGTGTACCTTTATTATggatctttcacctggaaaagtggatatagtgtagctttaaaaatgatttaaggtacacAACTTGATATAGTTAGAGTAAAACTTGAAAGTGCACTACACGCACCTTTCTAGACATGTGTAAAAGATACATAGTAATGGTAAAAAGTGTGCATTCTTTAGGGTACCACCCCAGAGACAAGGAATAGTACAGTTGAGTACCCTTGTTTCTGATGCTTCATGCAGTTATACGTGTCCTATATCTTAATGCCAAGTGACCATGCGTGATAAAAGTGCAATAGGTAAGAGGTCATTCTCAGTAAACTGCATGATTTATTATCATCCACGTTTtagcagtttggtgttctgatGAATCATCTTCCAAGTAATCTTTGGGTATTTGATAACTCCTGAGGAAAgataaaggaatactccagtgttttgCAGTGTCTGTAGTGTACGTGTGATTACCATGAACTGGAATTTCAACACCTTTatctgaaaaaagaacaaaacccTGTTTTCCAATATCATTTCTATTCAAAGAACAGTTCATACAAAACACTTTAATCATTTCTTCAGTGAGATATATTTTTAAGTGAAGACCTTAGTCTTACTCGGTATGATTAGTGCTTTCAGATGGGActgctttttcatttctcattatGTAGATGTGATGGTGCTGTGTGTAACAGAAAAATGACGTTTCATCGTTCTGTATGTTTAGATAACGCTTCACAGGAACAGCTTTTGGTAACATGTTCTGTCATGTCTTCATCATCTTAACACAGTTATTGTTAAAGTGTAACAGTTGTGTTGAATTTGTGTTGTACACTTGCATTACAAGTGAGTTTTGACCGAACAGTtttactgttcttttttttctaaaggaaGATGTGTTAGATTTCTGTTCTGTGGTAGAGATGCATCGATTCCAATAACATGCTCAGTTCCTCGTCCTTGTAAAAATGCTCCGATACCCACATCTGATGTGAGCCTAGTGTACGTTGTCGCACTAATGAACAGAGAACACGAATTGACAGCAATATGAATGTAATTCGTGATTAATGACGGCAATGTAAAGCAGACTGTAAACTGTTCTCTGCAAAAACTGTCAGGAGGACACACTACAGtgtcttcctacaatacaagtaacctgataaagcATCTTtagtagagagagagtgaggccGGCCGCACTGAGCACGCACAGCGTTATCAGCAAACGAAAGGTGCTGtgaattgcacacacacacaaatctattGGCAAGCCTGGAGCAGGCGAAGTGAGTGAACAGCGaaactgtggtgtgtgtgagagagcacttctgttcagcgagcactgagcacttaCAACACTCATGCTTTGGGTCTACACTTCACtcgctcatttttaatgaccatgctCGCTGATACAGGTCTTCACACTCAGGTTacactctctattaaagatactggTTATATTTCATAAGATTTTAACATAAGACTCAGCACATGGAGCTCACAGCAGCAAATAACATAAAGacagctaaataaaatattccataatGCCATGAAGTAGGTTCCTCATTTCAGTATCAGGGTACTCTTACgcagtctttaaaaaaatggcattgATGCATCTCTAGCCTGTGGTAACTGCACATTTGCTGCAAATGCAATGAATATAGACTGTCTTTAAAAACagtgaagtattcctttaatattatTGACTATCGTCAAAGCTTTCTGATGGAGTGACCTGTAAAGTGTTAATACCTGCATTTACTTCCTAAAGTCTGACAGTTAGACGTTCTGCGCTGTTATTCAGTGGTGTTGAGTGTTGATGAAACGGTGTAATCGGACTATGTGCTGTATGAGCCGTGACCATTTTTTTATTCGCACAAATAATGTCAAACAAGGTcagatgaaattttaaaaagcgAACAAAATGACAACACTGTTTTCAAAATCTGGttatgttctctctctttttttgtttttgttttaaaatctcGTTACTTCAGCGTAAGAGTTTACTAACAGACAATCATTTGATGCCAAAGTATAGTTTGtgtgaatttgttttatttagcattttctgttttttttagcttgcAACTCAGTGAGGCCTAGAAACATTGACAGTGTTTGAAAATGGTCATTATATTATCAAAACTAATTAACCACATGGTTTCCTTACACATAGCAGGTACTCGAAACTCAAATGTCTTGTTAAATTTGAACTAACTGGACTAGAATATGTAACTTACAagctttaaatgaaatataaccTTGCCTCAGTGTAGAATAAACTCACTCGATGATATTCATCAGTGCGATGAAAGTTTTACTGTGTCAAGTGTCAGTGATTTTTGTCAATGCAAAATGGTTTAATCTCTTTAAAATGGCTCATTTTGTGGCATCTAACCTCAATTTTTGTAAAGATTTTAGTGTATTGTGCCAATGAATGTACATTAAACTAATAAgatcagtca

Function

symbol description
slc25a42 Predicted to enable adenine nucleotide transmembrane transporter activity and adenosine-diphosphatase activity. Acts upstream of or within mitochondrial membrane organization. Predicted to be located in mitochondrion. Orthologous to human SLC25A42 (solute carrier family 25 member 42).

NR:

description
mitochondrial coenzyme A transporter SLC25A42 isoform X1

GO:

id name namespace
GO:0080121 AMP transport biological_process
GO:0015866 ADP transport biological_process
GO:0015867 ATP transport biological_process
GO:0035349 coenzyme A transmembrane transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043262 adenosine-diphosphatase activity molecular_function
GO:0015217 ADP transmembrane transporter activity molecular_function
GO:0080122 AMP transmembrane transporter activity molecular_function
GO:0015228 coenzyme A transmembrane transporter activity molecular_function
GO:0005347 ATP transmembrane transporter activity molecular_function

KEGG:

id description
K15085 SLC25A42; solute carrier family 25, member 42

RNA

RNA id representative length rna type GC content exon number start site end site
TU380138 False 2746 lncRNA 0.38 2 15625802 15682209
XM_026925405.2 True 5473 mRNA 0.42 8 15667753 15682276

Neighbor

gene id symbol gene type direction distance location
LOC113533252 mex3d,mex3b,LOC107736985 coding upstream 39519 15580021 ~ 15586283 (+)
mbd3a mbd3,LOC108427158,LOC105938962,LOC107713415,LOC107393299,LOC101480296,LOC106515020 coding upstream 47724 15571964 ~ 15578078 (+)
tcf3a LOC100304646 coding upstream 62017 15534922 ~ 15563785 (+)
map2k2b mp2k2,map2k2b,LOC108427153,LOC105905870 coding upstream 104581 15514412 ~ 15521221 (+)
pias4b LOC108280250 coding upstream 113889 15503633 ~ 15511913 (+)
LOC113533481 LOC108280200,LOC107723211,LOC107748524,LOC102294424,LOC102791396,LOC101468755,LOC100704480,LOC102200990 coding downstream 115915 15798191 ~ 15842389 (+)
sbno2a sbno2 coding downstream 180871 15863147 ~ 15890456 (+)
arhgap45a LOC108280537,LOC108427168 coding downstream 211725 15894001 ~ 15923289 (+)
pip5k1cb LOC108280566,LOC108427169 coding downstream 256619 15938895 ~ 15984585 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding downstream 309944 15992220 ~ 15999440 (+)
G320992 NA non-coding upstream 8679 15616911 ~ 15617123 (+)
G320991 LOC108280289,LOC106912954,LOC106923029,LOC102789877,LOC101482480 non-coding upstream 9584 15615997 ~ 15616218 (+)
G320988 NA non-coding upstream 12261 15613194 ~ 15613541 (+)
G320981 NA non-coding upstream 29576 15596024 ~ 15596226 (+)
G320977 NA non-coding upstream 54713 15570694 ~ 15571089 (+)
LOC117600003 NA non-coding downstream 795 15683071 ~ 15704584 (+)
G321203 NA non-coding downstream 340210 16022486 ~ 16023068 (+)
G321214 NA non-coding downstream 359518 16041794 ~ 16043738 (+)
G321217 NA non-coding downstream 363870 16046146 ~ 16046482 (+)
G321220 NA non-coding downstream 366818 16049094 ~ 16049308 (+)
LOC113533167 NA other upstream 55324 15566554 ~ 15570478 (+)
si:dkeyp-68b7.7 LOC108280928 other upstream 322514 15299061 ~ 15303288 (+)
fcer1gl LOC100304589 other upstream 372247 15249515 ~ 15253555 (+)
LOC113533365 LOC108280254 other upstream 524341 15082238 ~ 15101461 (+)
LOC113533366 NA other upstream 559431 15063721 ~ 15066371 (+)
G321088 NA other downstream 186740 15869016 ~ 15870995 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other downstream 247671 15929947 ~ 15936773 (+)
jund jund,LOC108280549 other downstream 418257 16100533 ~ 16111089 (+)
si:ch211-178n15.1 LOC108280694 other downstream 429759 16112035 ~ 16120033 (+)
G321257 LOC108280695 other downstream 449059 16131335 ~ 16132364 (+)

Expression


Co-expression Network