G321032


Basic Information

Item Value
gene id G321032
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 15592160 ~ 15592616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380184
TtggaaatcctgtcaggttagctcacaTATGGTAGCTGGCCAGAGTTACCAATGAATATTATTAACAACTATGACTTAAAAACCTGTTAGCTATAAGGCTTGTGTTAGCAGTGAAGATGGGTTAAAGTTAGCATTGAAGATtgttaatacatttataaacatgacTTTAAAGATCATTTatgaaatcctgtcaggttaggtTGTGCTACATAGCCAGCtatcaaagtaaaataaaaaagcatatgTATGAATGCCAAATACTTTTTCTCCCTATTTGGAATATTTCTGTATTCCTTCTGGGGACTACAATCTGCTGACAGAGGTCACTGATCTCAAGATTCTTCAGAATTTTTATGAATGAAagaagtttgtttttttaaatgaatgagtgCCTCTCTAGCATCTCTCAGTGATTAATTAGAATCTGGGTACTCCAGTCTGGATTGCCCTTTTGAGA

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380184 True 457 lncRNA 0.35 1 15592160 15592616

Neighbor

gene id symbol gene type direction distance location
onecut3b onecut3,LOC107724988,LOC107549809,LOC105906914,LOC107696512,LOC107552684,LOC105011560 coding downstream 102900 15463616 ~ 15489260 (-)
LOC113533539 LOC108280326 coding downstream 242654 15338737 ~ 15349506 (-)
plekhj1 plekhj1,LOC107696566,LOC107750216,LOC107671816 coding downstream 259499 15329012 ~ 15332661 (-)
LOC113533213 LOC108280248 coding downstream 285380 15304278 ~ 15306780 (-)
si:ch211-155e24.3 LOC108280454,LOC108232831,LOC103367105,LOC107383477 coding downstream 312194 15274921 ~ 15279966 (-)
LOC113533480 LOC108280289,LOC108427160,LOC107724981,LOC108239455,LOC106526424,LOC106923029 coding upstream 1819 15594435 ~ 15648744 (-)
zgc:85843 tm6sf2 coding upstream 261887 15854503 ~ 15861482 (-)
polr2ea polr2e,polr2eb,LOC107669821,LOC107599482 coding upstream 331605 15924221 ~ 15929067 (-)
LOC113533416 homer3,LOC108280570,LOC108427175,LOC107696283 coding upstream 449212 16041828 ~ 16068561 (-)
upf1 upf1,LOC107660376,LOC107724030,LOC105907049,LOC107696277 coding upstream 478490 16071106 ~ 16088518 (-)
G320897 NA non-coding downstream 131744 15380135 ~ 15460416 (-)
G320880 NA non-coding downstream 288135 15303811 ~ 15304025 (-)
G320871 NA non-coding downstream 305283 15286084 ~ 15286877 (-)
G320870 NA non-coding downstream 306219 15285638 ~ 15285941 (-)
G320868 NA non-coding downstream 307735 15283635 ~ 15284425 (-)
LOC117595737 NA non-coding upstream 218737 15811353 ~ 15827344 (-)
G321330 NA non-coding upstream 448265 16040881 ~ 16041741 (-)
G321347 NA non-coding upstream 456826 16049442 ~ 16049643 (-)
G321349 NA non-coding upstream 506252 16098868 ~ 16099238 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding upstream 595360 16187976 ~ 16223314 (-)
LOC113533479 LOC108280451 other downstream 360580 15222778 ~ 15231580 (-)
theg NA other downstream 846673 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 1912050 13665181 ~ 13680110 (-)
ccl25a NA other downstream 1976417 13612516 ~ 13615743 (-)
LOC113533649 LOC108280860,LOC108433106 other downstream 2664089 12908453 ~ 12928071 (-)
LOC113533563 NA other upstream 94466 15687082 ~ 15724356 (-)
G321462 NA other upstream 764958 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 972092 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 1380911 16973527 ~ 16973770 (-)
G322080 NA other upstream 1907449 17500065 ~ 17500832 (-)

Expression


Co-expression Network