G321257 (LOC108280695)


Basic Information

Item Value
gene id G321257
gene name LOC108280695
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16131335 ~ 16132364 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380434
CCGTTGTGGAAATATCTCGTGCCGTACCCAGTTCCAGGTGGAGGACGGCGCGTGCGCGCGGTACCAGCCCGTCCGCCTGATGGATACGCGTTGTAGAAAACGGTATTCCTGTGGTTTTTCTGTGGGTTCCAAGGGTCGTCGCCGATCATGTTGTCGGGTGTCTCTTCTTCCTCGCTTGTTCCGAGAGAACCAGGCGCTGGAGCGACGGCATCACCCACGCTCTCCTGCCCAGTGATCGTAGGATCAGGATAGGATTGCTGCGCGCTCACGCTCTCCACGCGCGCGCTTTCCAAGTTCGCGGGCGCTGCGCTCTCCGGATGCAGCTCTTGAACTCGGTTCGCGCTGTTATCATCCTCCGTGGTCGAGGTTGATCTTCTCGGGACGCCGCTACCCGAGTAGCCTGATGGTTGCGCTGGATTTGTGTTTTTGACGCGGCGGCGTTGGCGTAACGTCTTGCGCCCGGTGCCCCCGCGAGTCCTTGCCGTGGAGGTGCGCCCAGATTCGCGTTCCTAGCACCCGCTGCGCGGCCGCTCGCCACGAAGTAGGGTCTGCCGTCCGGTCCCATGACCGCGGACGCCGTTCTGCTGGAACCTGAGCGCGACGTCGTTACGCGAAAATGCGCCGAAGCATCTCGCGCTTCTCCAGGAGAAAGGGGGCTGGCCGCCTGGCTCCGGCTGCTCAGGTACACTCGGGACTCCCTCCTGGAGTGTAAGGGTGAGTGGTACTCGGTGCCGGTACTCAGTAAGCTGTACACGTGCCCGTTGTTCTCCCACTGGATCCTCTGCGTCCACGGGCTGACTCGGTCCCGCGCGTGCTGCCCGACGACCAAACTGACCAGCGCGCAGCATAAAAGCAAAACGACCAGTTTTACCATCTTGACCACAAAACGATTAAATCTAAAGGACTGAAGAGATGTTTTTCCCTCTGAAGACTTTAACTGAAGAGAAACACTGCTCCACCACCTCACTGATTTCACTGATTCTGCCCCGCACTCTGGCCTCCTCGAGGAAACTAGAAGAGGCAGCGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380434 True 1030 TUCP 0.60 1 16131335 16132364

Neighbor

gene id symbol gene type direction distance location
uba52 uba52,LOC100135798,LOC100194659 coding upstream 89597 16039835 ~ 16041738 (+)
cers4b LOC108280569,LOC108427174 coding upstream 93155 16028370 ~ 16038180 (+)
rab11bb LOC108280567,LOC108427173,LOC100692846,LOC105903927,LOC107660390,LOC105900968,LOC107552705 coding upstream 131895 15992220 ~ 15999440 (+)
pip5k1cb LOC108280566,LOC108427169 coding upstream 146750 15938895 ~ 15984585 (+)
arhgap45a LOC108280537,LOC108427168 coding upstream 208046 15894001 ~ 15923289 (+)
cplx4c cplx4c,LOC108280361 coding downstream 30090 16162454 ~ 16167346 (+)
rx2 LOC108280798,LOC108427186,LOC107596245,LOC107687913,LOC107723957,LOC107552715,LOC107696236 coding downstream 42206 16174570 ~ 16180499 (+)
trnag-gcc_18 NA coding downstream 51708 16184072 ~ 16184142 (+)
trnag-gcc_19 NA coding downstream 53133 16185497 ~ 16185567 (+)
calr3b LOC108280796,LOC108427098,LOC107750920,LOC107552714,LOC107723933,LOC107687912,LOC102296215 coding downstream 55625 16187989 ~ 16193122 (+)
G321256 NA non-coding upstream 330 16130730 ~ 16131005 (+)
G321255 NA non-coding upstream 651 16130422 ~ 16130684 (+)
G321254 NA non-coding upstream 1066 16129949 ~ 16130269 (+)
G321253 NA non-coding upstream 1535 16129201 ~ 16129800 (+)
G321247 NA non-coding upstream 32334 16098615 ~ 16099001 (+)
G321258 NA non-coding downstream 2960 16135324 ~ 16137604 (+)
LOC117599979 NA non-coding downstream 53256 16185620 ~ 16187003 (+)
trnag-gcc_20 NA non-coding downstream 54607 16186971 ~ 16187041 (+)
G321429 NA non-coding downstream 253893 16386257 ~ 16386523 (+)
G321434 NA non-coding downstream 303835 16436199 ~ 16446124 (+)
si:ch211-178n15.1 LOC108280694 other upstream 11302 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 20246 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 194562 15929947 ~ 15936773 (+)
G321088 NA other upstream 260340 15869016 ~ 15870995 (+)
slc25a42 slc25a42,LOC107696381 other upstream 449059 15625802 ~ 15682276 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 610441 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 624267 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 659038 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 706404 16838768 ~ 16859682 (+)
fuz fuz other downstream 1346470 17478834 ~ 17483677 (+)

Expression


Co-expression Network