G321349


Basic Information

Item Value
gene id G321349
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16098868 ~ 16099238 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380540
CGTTAGTTCAATTTCTAGCTAGGCAATTAATCTGTTCTTCCTCTTATCCACAGGGATCTGTGTGGTGATTTTACATGGTATTCATTTGatttagaagtgtgtgattCTTTGAGTTCAGATGCTGCAGCATTGTTAACACTGGTTACATGCAGCTGGATGGGACCAAAGCACTCGAACACTAAAACTGCAGGCCCTTTTCATTGGCCTCCTCTGAGCTCAGTTACATGGCTCCACTTCATGACTCACACACATGTGTGGAGCCCAAGGCCAAGAAGAACAGAGGTGATTATAATATATGAATACCACAATTGCAAAGGCATCGCTCTAAAACACAAGGACTTAAAACGCCCCAGAGTTTTTCTGAGACCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380540 True 371 lncRNA 0.43 1 16098868 16099238

Neighbor

gene id symbol gene type direction distance location
pgpep1 pgpep1,LOC107596298,LOC107552686,LOC107660389,LOC107696873 coding downstream 4014 16090524 ~ 16094854 (-)
upf1 upf1,LOC107660376,LOC107724030,LOC105907049,LOC107696277 coding downstream 10350 16071106 ~ 16088518 (-)
LOC113533416 homer3,LOC108280570,LOC108427175,LOC107696283 coding downstream 30307 16041828 ~ 16068561 (-)
polr2ea polr2e,polr2eb,LOC107669821,LOC107599482 coding downstream 169801 15924221 ~ 15929067 (-)
zgc:85843 tm6sf2 coding downstream 237386 15854503 ~ 15861482 (-)
LOC113533206 loxl5b,LOC108280695,LOC108427108 coding upstream 29463 16128701 ~ 16131801 (-)
LOC117599986 LOC108280695 coding upstream 32331 16131569 ~ 16132462 (-)
nmrk2 LOC108280697,LOC108427183,LOC107750947,LOC103029326,LOC107552712,LOC107696854,LOC107687917,LOC107723974 coding upstream 41526 16140764 ~ 16143363 (-)
atcayb atcay,LOC108280696,LOC108427182,LOC105906996,LOC105906923 coding upstream 48625 16147863 ~ 16160217 (-)
klf2b LOC108280879 coding upstream 128433 16227671 ~ 16230299 (-)
G321347 NA non-coding downstream 49225 16049442 ~ 16049643 (-)
G321330 NA non-coding downstream 57127 16040881 ~ 16041741 (-)
LOC117595737 NA non-coding downstream 271524 15811353 ~ 15827344 (-)
G321032 NA non-coding downstream 506252 15592160 ~ 15592616 (-)
G320897 NA non-coding downstream 638452 15380135 ~ 15460416 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding upstream 88738 16187976 ~ 16223314 (-)
G321465 NA non-coding upstream 275272 16374510 ~ 16375343 (-)
G321468 NA non-coding upstream 294970 16394208 ~ 16456123 (-)
LOC117595731 NA non-coding upstream 295515 16394753 ~ 16395539 (-)
G321470 NA non-coding upstream 300062 16399300 ~ 16401527 (-)
LOC113533563 NA other downstream 374512 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 867288 15222778 ~ 15231580 (-)
theg NA other downstream 1353381 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2418758 13665181 ~ 13680110 (-)
ccl25a NA other downstream 2483125 13612516 ~ 13615743 (-)
G321462 NA other upstream 258336 16357574 ~ 16367004 (-)
stk11 stk11 other upstream 465470 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 874289 16973527 ~ 16973770 (-)
G322080 NA other upstream 1400827 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1754609 17853847 ~ 17872108 (-)

Expression


Co-expression Network