G321434


Basic Information

Item Value
gene id G321434
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16436199 ~ 16446124 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380639
GTttggattacttttttttttgtgtgtctttgtatgGACACTCATCTTCTCTTCTGCGTGTGTATGGAAGGATGTGCCTTGTTTGAGAAGCCACATATATGTATGCTGCCCCAGGGGGACGTGAAACCTGATCCGGCGCTGCCATTTTAGCCTTAACTGACACTCAACACGTTCACTGCAACATGTGGACTTGTTCCTCTGTCCGCCATCTGACTCTGCGCTTTTGGCTCTTCATACAGCCGGCTGTAACCGCTGGGCCGAGGTCAGCCGATCTAAACTAAATGTGATTGTTCTGCCATAGCCCTCGACCTCTACAATCAGATCTGAGAACAGCCTGATCCCTTCAGCTGTCTGTTATGGCTTTGTGCGGGATGATGACTCACTTGTTTACCATTTCCTTGTCCCCAGAAAGGAATGCCGAGGCGAGTTCTGTGAAGAAACAGTAGCCTACAGAGAACGAACGGGCCGTGTGCTGTTGTTCTTATTGACCATTCTTTCCTCAAGGAGCTGCACTGTAGTCCGATTGTGTCCGAAGTGAAAAAAGTGCCAGTTGTTAATGGCGTAAATGATTTGGGTTCAGTTTCTTTTGTGGTTTTTGTGGAGCACCTTGCCAGGGGTTTGCCTTTGTTCCATTTATAACAAGATTTCATGTTCAAAGTCCAGTTTATTTAAAGTCATATTATCCCAATGCTAAACCAGAAGGCTTAGTGGCTTCCAAGGAAATGTTTGTGGTGCATCTTATGCACAGAGTGTTGCATTAAGAATATTGGACACTTTGCTGTGCTCAAATATTGAAAGGTTATAAATTTCACACTTATGGGTCATATCTCTGTCCAACTCAAGCAACCATGCTGCTTATAGATGAAAGATTTAAAGGTAAATATGTTGTTATGCTTTCATTACCTTGCATGTGTCTGATACGAACGTCTGCCTGTAGCAAGAAATCCTGTTTGAATAAGCAAACTAACGTTGCTTAGCAAAGCAGAGAATTATTGGaaactttttttttgttttttttttaaaaagatatgaaGAAACATGAGcagatttttttatgattttgttttCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380639 True 1070 lncRNA 0.42 2 16436199 16446124

Neighbor

gene id symbol gene type direction distance location
mau2 mau2 coding upstream 16791 16404788 ~ 16419408 (+)
sugp1 sugp1,LOC107729615,LOC107563402,LOC100304763 coding upstream 31632 16395828 ~ 16404567 (+)
rab8a rab8a,LOC107687930,LOC107696202,LOC103479775 coding upstream 50978 16376170 ~ 16385221 (+)
tpm4b tpm4,tpm4b,LOC108280645,LOC102199996,LOC100703626,LOC101474423,LOC108427191,LOC106537044,LOC103156889,LOC108424981 coding upstream 60847 16357577 ~ 16375352 (+)
eps15l1b LOC108280681 coding upstream 212869 16196924 ~ 16223330 (+)
ndufa13 ndufa13,LOC102786334 coding downstream 11553 16457677 ~ 16460380 (+)
LOC113533391 LOC108280648,LOC108427199 coding downstream 14686 16460810 ~ 16468366 (+)
LOC113533302 LOC108280185,LOC108427202 coding downstream 96210 16542334 ~ 16565021 (+)
LOC113533121 kcnj10,LOC108280182 coding downstream 174559 16620683 ~ 16629472 (+)
tgm1l1 LOC108280800 coding downstream 237532 16683656 ~ 16706323 (+)
G321429 NA non-coding upstream 49676 16386257 ~ 16386523 (+)
trnag-gcc_20 NA non-coding upstream 249158 16186971 ~ 16187041 (+)
LOC117599979 NA non-coding upstream 249196 16185620 ~ 16187003 (+)
G321258 NA non-coding upstream 298595 16135324 ~ 16137604 (+)
G321256 NA non-coding upstream 305194 16130730 ~ 16131005 (+)
G321435 NA non-coding downstream 10319 16456443 ~ 16457168 (+)
G321454 NA non-coding downstream 148073 16594197 ~ 16600593 (+)
G321563 NA non-coding downstream 220306 16666430 ~ 16703816 (+)
G321584 NA non-coding downstream 299652 16745776 ~ 16755230 (+)
G321582 NA non-coding downstream 304036 16750160 ~ 16792097 (+)
G321257 LOC108280695 other upstream 303835 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 316166 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 325110 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 499426 15929947 ~ 15936773 (+)
G321088 NA other upstream 565204 15869016 ~ 15870995 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other downstream 296681 16742805 ~ 16748340 (+)
LOC117599973 LOC108280611,LOC108261605,LOC108261562,LOC108261692,LOC108280616 other downstream 310507 16756631 ~ 16788968 (+)
LOC117595733 LOC108280611,LOC108261562,LOC108280614,LOC108280616,LOC108261605,LOC108261692 other downstream 345278 16791402 ~ 16793698 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 392644 16838768 ~ 16859682 (+)
fuz fuz other downstream 1032710 17478834 ~ 17483677 (+)

Expression


Co-expression Network