G321462


Basic Information

Item Value
gene id G321462
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16357574 ~ 16367004 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380669
cttggccacaagtcaagtcacttctgtatatatatatatatatatatatatatgcagaagCCACAATAATGACTGATCTTCTCTCAAGGCTGGGAGTAGACATGTATGTAGACACATCTTCTTGTTTGTGAACCAGCAGAATGCATTCTTAGCTGGCTGGAGTGCTCACTGTATGAAAtctaaaatacatttgaaatattttctgtagTTCTGAAAGATATTCCTTAAGCACATCTGTATAAATGTCTTAACTCTGAAATATCACTTCCACTCAGATTCCTGGAGCCAATGCATGACCTGAGCATGGAGTTCAAATATCATTCAGCTGTGTTCAGACCCCTGGGTCAGGAACTTGACTTGAAATGTGAAATTCAAATTGAGCTACATTATGATCTACAAATAAGAATATTCATACATGTAACTTCTAATTCATAGTAAATTCTGTACATGTTATCACTTTAAAGTGGTAGAAAAGAAGTGTTACCACTTGTTAGGTTCGtgtgcagacagagagaaaccaCACCACATGCAGCAGTTTAaatgacaggaagtgaaaaaGGTAAAGTGTGTAGTAGGCGTCACATCCCATATTTCCTGTGGACACTGTTTCCAGGAAGGGGGCTTATTTTAGTGGTCGACATAAGCATCATTTCCTCTGCTGAAAGCTAGGCCTACACAATTGTCAACTCCAACCACACATACTCAAGGTAAAACAGAGTGGTGGCTGGTCAGAAATGTACAAACCAATCACTTTCGAATGTGTTTGTATCATGCAGATGACAATTCACCACAGATTCGTAGCATAGAAACTCTCATTGCATCCATCCAGGTAGGGCTGCGCACTACACTGAATTTTACTTGTAATCatgattttcacatgattttttttttttgataagcTATATAAGCTcatttcccatgtcagaaagcttactgtctgttacaaagccctgacaccggagactcctcccatgtatgttaaataaacttctacATACAGAAACTTCACTACACTGAGCAAAATAATCATGGGTTTCATTTCTGTTATCACCTTCtgcacatttatttttcctctatGAACATTAAAGACCTATGCAGGCAGCATATTCAAAAAAGAGGACAGGTGGAAACATTAAGAATTGTTTCTGTAGCTTTGAGATTTTTCCACACAGCCTCAGTGTCGacagtttctctttctttccctctttttctgCCATTCGGTATCCATCAAGCTCACAGTTTTGCTGCTTTATGCAAGAAAAATATAGCAGAGCGAGTGGATTACGGAATTGATTCTTTTGAACGGCAGTTCAACAGTATAACTGACTCCTCAACGGCCCCTAGATGGAGGAGGCCCTCAAGGAttaaaaagtttacattttcaaatgacGGGACAGGGATTCAGAGAGACTGCGTTTTCACAAGGCTCATTTAACCCCTTAACCTCCCAGACATACTTTCTTAAACTCTCATAACTACGTACAttttctattagtttcactgtagctACTGCATAATACATACTACTTAATGAATAACTTGAGAATAATATGTGAGAATTAACTCGATTGACATAAATGTTGACTCTAATTCAGTTCTGATTCTACATTAATCCACGTTAATTACATATACATGATTACATATTGCTACTAGCCATTCTGTCTAATGTTACCAATTACCATGATATGtcaatatatgtatattttctaCAATGTCtatgcattatgcattataTTGTCAATGTAATTACCCATATAAACCTtaatatatgtgtaatatataaaactattgGTCATTGTGACCCATTatcctacatgtgaaaaaatctatattataaaatatattagaatatgttatacaaaatattttaatagtgggcagtgttgctgcctcacaactccagggtccctgcAGTTTGATCCTATAagcttggattactgtctgtctatgtggagttttgctcgtctcctccaggttctctggtttcctccgaCCGCCCAAAAACATGGCGGGCTGGCTACTCCCAATCGCCCCcaagtgtgaatatgtgtgtgcatggtgccctctGATGGACTCGTGAACCTTCCAAGGGTGTAATTCCGCATCACGCCCagcattcccaggataggctctggatccgcCCTCTGgaccctggccaggataaaggTGCGGAAATGGGAAGTaatggctcagtggttaaggcattgggctGCTGATTGGAAAGTTGTGAGCTCCAATTCAAGCATGGCCAAGCTGCCAGGATtggagcaagacccttaacttTAACTACTCCGTTATATCCTGCCTCAATTGTatgtcactttggataaaagcgtcagCCAAAAATAACGTTTTCTATCTTAAAATGTAATTGGTGTGATTTTCTGTAGATCTAGAACAACCATAAATGATCAAATGGTACCACAAAACATAATATAAGAcataaaagctgtaaaaaatTCTGGCCAATTTACTGAACACTAATATTGTGctatatatttgttttgtgttagtcATATAAAGACTCATATACTATTCACAATTCGGCTGAACTGATAATAATACATACCCTTCACTTAGAAAAAAGCATACTAAAGTGTACCTTACCTTGTCACTGGGTTGGTACATATTGATACATCTTTTGTACTGTTAGTATCTATCTTTTGCAAGGGTGCATGTAGTGTAAAGTTAACCCTACAAACTAAAAACTAGTTACAGTGCATTTTTGTATCTTAAATCATTTAAAGGTTCACTATATCCACACCTCCAGGTGAAAGATAGCTGTTAAAGGTTCCAATGAATGTACCCTTAAAGATACAGTTTGGTACTACTGACAACATCCTTAAATCCATCATACTGCTAATTCTACACAATAttaatctggagcctatcccaggtgACTCAGGGCACAGGACATGCTGGGTGGGGTGCCAACCTGTCACAGGGCACAgctgcacacacccacactacAGACAACTGAGAAATACCAGTCTACCTACAGTGCATGTCACCAGACTGGGGAGGAAGGAGGAAACCCCCGAGGCACGGGGAGAGCAGGCAACAAGCACACAAACCTGCAGACCAGAGGTGCAAAGCAAGCGTGCTAGCCAAGGTACCAAGGCGGAGGCGGGACTCGAGCCCACAACCCCCAGGGTGCGATGCAACAGTGTTAACCACCAAGCCACTAAGCCACCGCGCCCCCCGATAAAAGGGTTATTTATACAGTCGGAAACGATGCTCAATGCCGAACGAACGAATCGATTCTCTCCGAATCCGAGTCTTTCAGGGGAATCGATTCGTCGCGAGTCGCTCGCTAGGAAGTAAAAAAGCGCAAAGTCTCACTTTCTCGCGCAGATCCCGTTCTTCATCCAGCTCTCTCTGGTACAGCTGGGCTCGATCCTCAGCTTCATCCGCCTGCTGCTGTAAGGCCTGGATCCTCCTCTTCACCGAGTCTAACGAGTTCAGAGCCATTACTGCGCCGTCAGCAAACACACTCTAACCCAAAGAGTCACTCAGAAATGGCCCAGAGTGCGCAAAGAGTACTAAACCCTCCcgatgaatgaaggaaagaaagaattaaagtTAGTTCCAGGTTTTAAAAGAGCTCTCAGGAATGTCTGTGCTGCTATTTTCCCCTGAAGTCAGCTTCCATTAGCAGTTGAGTGCGCGCAATGGAGACGCAGCAGCCTGCAGGAAAAGGGCAGGAACGCGCCAAGAACAGTTTAGCGTTAAATCTTCCAATCCTGGGAAAGAAAGGAGTTTCAGATGACATCACGCCTGTAGGAGGAGGAAGGTCTTCCTGTATGAAATGTAGGCAGATGTTTTCTGGACGCTGGATGTGACTTTTGGACGTTGGATGCATTTAATGAGCGTTTGGTCTTGGCAGGAGTTCAGGGCTGAAGTGCACTAAAGCCAGTGAAACAATGAAGGCTTTCTGAGGTGCCACCTTGACAAATAACCTGACTGAATGTGAAAAGAGAGGTTTGGCTTGTAACACTTTGGCCACTTGTATTTGCAGTTAGGGCTTGCATTTGTGATAATGAACTCTGGGATTGTTAATTGCTCTGAGGGgctgacaaacacacagcccTACCTGTCCTGGCCCGATTGCTTTTCCATTCCCAGTGGGATGACCACTTACTGTTTGTAAATGAAGCGTTTTCAAGTGATTTGTAAATTACTGTAGGTTCCACTATCTGCTTTGTTTTATATGGATCTCAAAGCTGCTTATTGAGACCCTAGATTGCTTTGAAATCTAAGTTATATAGATTACTTGAATGAAATGTATATAGCGGAGTGCAAAAGTGGAAAGGTGCATGAAGTACttctctaaaagctaattaaattaTCAAGAATTGTCTTCAAGCTGTAATTCCtaccttacttttttttttttttttttaagtttgccACATTCACGTtaccaggtaaaagatacacactataGGTACAAGAGATGCATCCTTGAGCATACCAATCCCAATTCAAAGTGTTTAAGCTGTTCAGGAACTACATAATCCCTTAACAGGCATATATCATCTTTATAACATAGAAAAATgggtgttttcttttctgaattGTTGTTTAAGCTGTTTTGGGAGGCTAAACGATTTCAGAAGTGAAGTCTGTAATCATTTCTGAATCTTAATCCAAAGGAAGAAATATCTAATTGGATTTACACGCAGTCAAAATCCAAGGATTAACCAGCATTACGATCCTTTCTGAgctgttttctctctcatctgtcactctctctctccctctctctctctccctctctctctctctctatctcacacacacagacacacacacacatactcacacactcagagagagagattgagagagagagagagagagagagagagaatggaagaCTAAGCTATCCCTGAAGGATACAGCCCACTTTCAGTTTGACATTACACTGGAAACTGGAAAATTCAAATGTAGTGCTGATTTGGTTCACACAATTCTCTCAGGAGATTTCTgataataactcaaaaaacCTCCATTTAGATGTTACACTGAAGTGAATAATGTAGAAAATACATAGTCAGACTTAATCGtttgatgaaaaacaaattAAGAAAAGTAAGTTACGCCTCTATTgctactctctctctgtctctctctctcagtgtgtgtgtgtgtgtgtgtgggtgaagtTAGTTTTGGGAGCTGCAGACAGCAGGAATGTGCGTGAATGTGTTTTCTCTTCCCAGCGGAAGAGCTCCAGAGCGATGCATCAGACTCTGGAGGGGAGACTTCACTGTTTGCTTTAGACGCATTCCAACCATTCCAGGGCTGCTGCATAACTGACTGGGGTCTGgcctttgtctgtgtgtgtgtgtgtgtgtgtgtgtgttagtggtgcTGAGGACTTAATAATGTCTCAATAAACAGAAGATTGtgtaattaacataattaactCGATGTGGGAAGTGAATGCACCTTTCCAAGAATCAGCATGTAACTGAGAACAGAGGTGTATTATGGGAAATAAATCATTAAGATAAATGGAAGGATCTAGGATTTGGATTtggagtgtgtttttgtttttcctctagCATTTCTTTTACATGGAATTATTTGAtgacaaaatggagaaaatggagatcTCTGTTAGCTGgtgcaataaaaaacaaactatttGCAAAATACAGCATGAACAAAAGATATTGTCAGTCATGAAGAATGGTAATGGTAGAATagaaggattattattattattttaatctcaGTAAGATCACTCTTTTAGGAATGAATGGCACTACTGGAGACGTCATGTCCAGACTACTTTTATAATGATCTGTTTGAGTCATGTTTTGGCTCCTTTGTCTCCTGTGCCTTCTCGCTGTCTCTAACTTACCTCACTGTAGGCTTTAAATGTGGTGTTCACTATAAATCCTTCAGGTTTCCTGAAGACTATCATTGTCTATAGCTGTTGTAGAGATTATACTAGTTCAAATAGGAATCACGTCTGTTGAGATTTTTGGTTACAGATTTTAAACAGTGATACAAGGTGGCCTACATCTGTGAcaaaaaatatctaaatttaATTGCAAgcaattgtaaatgtaaatggaataaataaagcTAAACATATGACTGTTGTAGGACCATTTTGTTAATCTGTGCATGGTTGGTTAGTCTTTGGGTGTTTTCTTCCAAGTGTAAACAGTGTCTTTAAGACTTGGGTGCAGTCCAGAGAATGGGTCTGTATTCAGCAAGCCTCTCAGAATTACCCCTAAAACAATACTAAAAGTGTTTTTCTAACTAAAATTACTCACAGCCCAAAATGTCTGCTGGTTCCTCAGTTTGTTCCTCTGGATAAACCCTTCAAGGTTCTTTGTAGAACCTTATAACAGAAGGTTTCCATTTTAGAGTGGGTTCCATGTAAAAGCCCATTAGGAAGCAAAAACCTGTAACTGTCCAAAGATCCCTTAAACAacccctttttttcccctcagagtGTAGAATTGAACATTTCTGACCTAATCAGGCGCCATGGTCTGCTTGAACCCTTTTAAATGGACCAGTTATTCATGTTCCTTTGACAATTATTTGAGTTTTTGTCCTAAAAAAATCATCAGTCACCACtatgggctgtattcagagtagAGGTAAGCATGTGCAGTGAtgatttaataacaaaatagcACACATCCGTGTTCAGACCTCAAACATAACTactgttaaattgttaaattacaGCTAGTATTATTCATGCAACAATATATTGGTGATATAGACTTCtagcagatgtttatttcaatgtgtGCCATCTTCCCATTCATATATCAGAgtattaaactttttaaaatggtctcttgcttttatgttccATTATAATACATTTCACATCACGGTAAACAAAAACGCTATTTCTTTCTTAAGGCCGCATTTtctataccttttttttttaacttaaaaagcAAGTGCTTGTGTTGTCTCAGAtacttctactcaagaaaagtGTGGGGACCtcagaggcatgaactacatgcaggtgattttaatagtCTGAAAGGGGAGTGCAGAAAATCAATTTCAGCAGGTGCGTAACCCAGCTCTGAATACGCGCAACTTTTCCCACATAAATATTGGCGAAATTTTTTGCACTTAGGTCACCAACCCTGAATATGGCCCTATATGTCTATATGACCATAGtgacatctgtctgtctctctgatattTCCGTACTTACATCTGTGGCCTTCTTCTCAGACAGTTCCAGTTTCTCCTGGGCATCTTTGAGGGCCTCGGAGTACTTGTCCACTTCATCCTCTGTGCCCTTGAGTTTCTTCTGCAGCCCCAGCAGCTCATCTTCCAGCCTGCTTGCACTTGTCCTCCGACACCTTCTTGTCCAACTCGGCCTGCTCTGCACGATCAAAGGCATTTTCCTTGTCCCCCTTCAGCATCTGCATTTTCTTCTTGATCGCCTCCATTTTGCTGGCTGTGGTTCGACTCTCGTTAGAGGAAAATGTACAGAATCGAAGGAGCTGGTCTCACTCAAGAGTGTAGAGGATGGTCAGAATGGAGCTTTTCCTGGTCAAGCGAGGAGGTTGCGAAGACAGAAGGTGATGATGaggacacagaaagaaagagaaagagagagagaggggagtgGAGTGGAGGGAAAGAGCAGGCTAAAGCAGAATGAAACACAACACTTCTGTGGAAGGTTTAAACCTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380669 True 7701 TUCP 0.40 2 16357574 16367004

Neighbor

gene id symbol gene type direction distance location
LOC113533484 LOC108280930,LOC108427189 coding downstream 14737 16336003 ~ 16342837 (-)
ap1m1 ap1m1,LOC107696211 coding downstream 30617 16308558 ~ 16326957 (-)
klf2b LOC108280879 coding downstream 127275 16227671 ~ 16230299 (-)
atcayb atcay,LOC108280696,LOC108427182,LOC105906996,LOC105906923 coding downstream 197357 16147863 ~ 16160217 (-)
nmrk2 LOC108280697,LOC108427183,LOC107750947,LOC103029326,LOC107552712,LOC107696854,LOC107687917,LOC107723974 coding downstream 214211 16140764 ~ 16143363 (-)
cib3 cib3,LOC107687907 coding upstream 18423 16385427 ~ 16392280 (-)
cirbpa cirbpa,LOC108280649,LOC107655466,LOC107574409,LOC107729620,LOC107665639,LOC107712399 coding upstream 103095 16470099 ~ 16473688 (-)
LOC113533290 midn,LOC108271022 coding upstream 142557 16509561 ~ 16526583 (-)
LOC113533174 LOC108280837 coding upstream 227140 16594144 ~ 16601594 (-)
LOC113533630 pnp5a,LOC108280898,LOC108427136,LOC107692836,LOC107747996,LOC107569603,LOC107728028,LOC108440276,LOC107703870 coding upstream 238394 16605398 ~ 16610978 (-)
G321354 calr3b,LOC107750920,LOC107696693,LOC108280796,LOC107552714 non-coding downstream 134260 16187976 ~ 16223314 (-)
G321349 NA non-coding downstream 258336 16098868 ~ 16099238 (-)
G321347 NA non-coding downstream 307931 16049442 ~ 16049643 (-)
G321330 NA non-coding downstream 315833 16040881 ~ 16041741 (-)
LOC117595737 NA non-coding downstream 530230 15811353 ~ 15827344 (-)
G321465 NA non-coding upstream 7506 16374510 ~ 16375343 (-)
G321468 NA non-coding upstream 27204 16394208 ~ 16456123 (-)
LOC117595731 NA non-coding upstream 27749 16394753 ~ 16395539 (-)
G321470 NA non-coding upstream 32296 16399300 ~ 16401527 (-)
G321505 NA non-coding upstream 151384 16518388 ~ 16520370 (-)
LOC113533563 NA other downstream 633218 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 1125994 15222778 ~ 15231580 (-)
theg NA other downstream 1612087 14731734 ~ 14745487 (-)
LOC113533556 LOC108280202 other downstream 2677464 13665181 ~ 13680110 (-)
ccl25a NA other downstream 2741831 13612516 ~ 13615743 (-)
stk11 stk11 other upstream 197704 16564708 ~ 16587816 (-)
trnal-uaa_3 NA other upstream 606523 16973527 ~ 16973770 (-)
G322080 NA other upstream 1133061 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1486843 17853847 ~ 17872108 (-)
G322538 NA other upstream 2027245 18394249 ~ 18394823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G172643 NA non-coding CI01000034 null 5052400 ~ 5052726 (-)
bowfin (Amia calva) G155701 NA non-coding CM030142.1 CM030142.1 14300475 ~ 14305697 (-)
tiger barb (Puntius tetrazona) G132773 NA non-coding NC_056717.1 CM032086.1 13555011 ~ 13556679 (+)