G321536


Basic Information

Item Value
gene id G321536
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16608816 ~ 16609557 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380749
aaaaaagcgCCATGATGTAGAACAAATTCTTCATTATCATCAGGATCGTGTGCCTGAAATAAATcgggaatgggatattcaaacAGTACATATAGgtatgatgatcaggtgtccTAATCTAACACCTTTGTTCTGTCTATCACAGCTCCACTGGGTTGTGTAGTTGTCTTCTTTTTAgctcattttattaataatatatcaaTAATAAGTTTTAACAGGGAAATCTGCTGACTCTGTCATGCTGTGAGAGTTTAACATCAGGAGATATGAGTCAATTAACACCGAGCACGTATCTCAAGCATTTTCAGACGCACAGCATGCTGCAGATATGCATGAAAACATGTCCATGTCCCctgttgtgtttcttttttaagtcCATAAAGATGCAATGAATTCACACATTTCCACTTTGTGTGCTCTGTAAACTTCATCCCGCTCTCTTGTGTCACATGTTTAAGTGAACTCTACTGCAAATACAGCTGTCCCAAAGAAACTTTCCACATCCATCATGTTTCCTGGGCACTGCTGTATGTTTGGGCGTTAGTTTCCTTTATAAAAAATTTAGCATGTTGTCATGCCAGTGCAATATCACGGTGCTGCACGTTGTGACACGTCCAGTATGAAGCTTCTAGGTAGTACTGCTCTTATATATTACATGTAGTATAGGAAGAACGCTATTCAACCCCTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380749 True 690 lncRNA 0.39 2 16608816 16609557

Neighbor

gene id symbol gene type direction distance location
LOC113533174 LOC108280837 coding downstream 7222 16594144 ~ 16601594 (-)
LOC113533290 midn,LOC108271022 coding downstream 82233 16509561 ~ 16526583 (-)
cirbpa cirbpa,LOC108280649,LOC107655466,LOC107574409,LOC107729620,LOC107665639,LOC107712399 coding downstream 135128 16470099 ~ 16473688 (-)
cib3 cib3,LOC107687907 coding downstream 216536 16385427 ~ 16392280 (-)
LOC113533484 LOC108280930,LOC108427189 coding downstream 265979 16336003 ~ 16342837 (-)
LOC113533663 NA coding upstream 10076 16619633 ~ 16619734 (-)
foxl2b foxl2,LOC108280919,LOC101448029 coding upstream 26563 16636120 ~ 16638282 (-)
LOC113533139 nop9 coding upstream 56072 16665629 ~ 16678051 (-)
abhd4 abhd4,LOC108280801,LOC107655861 coding upstream 97659 16707216 ~ 16714338 (-)
lrrc24 lrrc24 coding upstream 277549 16887106 ~ 16912991 (-)
LOC113533305 NA non-coding downstream 61315 16546239 ~ 16547501 (-)
G321505 NA non-coding downstream 88446 16518388 ~ 16520370 (-)
G321468 NA non-coding downstream 152693 16394208 ~ 16456123 (-)
G321470 NA non-coding downstream 207289 16399300 ~ 16401527 (-)
LOC117595731 NA non-coding downstream 213277 16394753 ~ 16395539 (-)
G321652 NA non-coding upstream 133349 16742906 ~ 16744015 (-)
G321998 NA non-coding upstream 750231 17359788 ~ 17389919 (-)
G322072 fuz non-coding upstream 870885 17480442 ~ 17481385 (-)
G322251 yme1l1b,yme1l1,LOC108430171,LOC107681681 non-coding upstream 1239595 17849152 ~ 17850372 (-)
G322250 NA non-coding upstream 1243076 17852633 ~ 17853837 (-)
stk11 stk11 other downstream 21000 16564708 ~ 16587816 (-)
G321462 NA other downstream 241812 16357574 ~ 16367004 (-)
LOC113533563 NA other downstream 884460 15687082 ~ 15724356 (-)
LOC113533479 LOC108280451 other downstream 1377236 15222778 ~ 15231580 (-)
theg NA other downstream 1863329 14731734 ~ 14745487 (-)
trnal-uaa_3 NA other upstream 363970 16973527 ~ 16973770 (-)
G322080 NA other upstream 890508 17500065 ~ 17500832 (-)
LOC113546399 LOC108280496,LOC108430154 other upstream 1244290 17853847 ~ 17872108 (-)
G322538 NA other upstream 1784692 18394249 ~ 18394823 (-)
G322826 NA other upstream 2144215 18753772 ~ 18755593 (-)

Expression


Co-expression Network