G321582


Basic Information

Item Value
gene id G321582
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047615.1
NCBI id CM018561.1
chromosome length 21248730
location 16750160 ~ 16792097 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU380812
AGAGGAACTGCTTGAGTTGCTACAGACACAGTAACAACTTCACACAGAAGCAGGACTCAAGAAAAGCTCACAATTTTTTCAACATCAGAACAAGTTTAACATGagctgctttttcatttttattctcgtCATTTCCAGTGCTGTCTGTCAGGCATCGAGGGAGTTTAGTATTAAAACTGGAGCATCTGTCACTATCCCATGTCGTTATGATAGGAAATATATACAACATAAGAAATACTGGTGCTATGGAGAAACATTCAATTTCTGCACAGTTCAGGCGTATGCCAATAATACAAAGGGGAAAGTGACAGTGACTGATTACCCAGCTGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU380812 True 333 lncRNA 0.40 2 16750160 16792097

Neighbor

gene id symbol gene type direction distance location
LOC113533485 LOC108280611,LOC108261562,LOC108280616,LOC108261605 coding upstream 9557 16718816 ~ 16740603 (+)
LOC113533288 dad1,LOC103040403,LOC107687594,LOC107726313 coding upstream 32953 16714399 ~ 16717207 (+)
tgm1l1 LOC108280800 coding upstream 43837 16683656 ~ 16706323 (+)
LOC113533121 kcnj10,LOC108280182 coding upstream 120688 16620683 ~ 16629472 (+)
LOC113533302 LOC108280185,LOC108427202 coding upstream 185139 16542334 ~ 16565021 (+)
LOC117599974 LOC108261605 coding downstream 6689 16798786 ~ 16805263 (+)
LOC117599976 LOC108280611,LOC108280616,LOC108261605 coding downstream 28638 16820735 ~ 16824608 (+)
LOC117599975 LOC108280611,LOC108261605 coding downstream 38005 16830102 ~ 16845645 (+)
LOC117595734 LOC108261605,LOC108280611 coding downstream 68726 16860823 ~ 16868946 (+)
LOC113546333 NA coding downstream 81785 16873882 ~ 16882758 (+)
G321563 NA non-coding upstream 46344 16666430 ~ 16703816 (+)
G321454 NA non-coding upstream 149567 16594197 ~ 16600593 (+)
G321435 NA non-coding upstream 292992 16456443 ~ 16457168 (+)
G321434 NA non-coding upstream 304036 16436199 ~ 16446124 (+)
G321429 NA non-coding upstream 363637 16386257 ~ 16386523 (+)
G321591 NA non-coding downstream 617 16792714 ~ 16859578 (+)
G321602 NA non-coding downstream 100716 16892813 ~ 16893024 (+)
G321704 LOC108410862 non-coding downstream 166648 16958745 ~ 16960734 (+)
LOC117599934 NA non-coding downstream 733474 17525571 ~ 17537160 (+)
G322127 NA non-coding downstream 839117 17631214 ~ 17631512 (+)
LOC117599972 LOC108280611,LOC108280616,LOC108261562,LOC108261605,LOC108280614,LOC108280615,LOC108261692 other upstream 1820 16742805 ~ 16748340 (+)
G321257 LOC108280695 other upstream 617796 16131335 ~ 16132364 (+)
si:ch211-178n15.1 LOC108280694 other upstream 630127 16112035 ~ 16120033 (+)
jund jund,LOC108280549 other upstream 639071 16100533 ~ 16111089 (+)
gpx4b gpx4b,gpx4,LOC107552704,LOC107723219,LOC103364371,LOC102207447 other upstream 813387 15929947 ~ 15936773 (+)
LOC117599970 LOC108280611,LOC108261562,LOC108261692,LOC108261605 other downstream 46671 16838768 ~ 16859682 (+)
fuz fuz other downstream 686737 17478834 ~ 17483677 (+)
egfra egfr,LOC107747514,LOC107691124 other downstream 778552 17570649 ~ 17636609 (+)
npc1 npc1 other downstream 796975 17589072 ~ 17666213 (+)
si:ch211-162e15.3 LOC108280563 other downstream 1433824 18225921 ~ 18227233 (+)

Expression


Co-expression Network